CI01000024_08500620_08512420 (ACV1B, ACVR1BA, ACVR1BB, ACVR1B)


Basic Information

Item Value
gene id CI01000024_08500620_08512420
gene name ACV1B, ACVR1BA, ACVR1BB, ACVR1B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000024
NCBI id null
chromosome length 8644187
location 8499822 ~ 8512420 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000024_08500620_08512420.mRNA
CTCTGTTCTGTAACTGCACCGCACCACACTGTGAGAAGAATAGTTTTAAGTGCGAGACCAACGGGGCGTGTGTGGCCTCCACCTCTATCATTGAAGGACAGGAGCAGCATGTGCGGCTCTGCATTCAAAAAGAGAAGCTGGTTCCACCCGGCCAGCCATTCTACTGCCTCAGCGCAGAGGGACTGATGAACACACACTGTTGCTACTCTGATTACTGCAACAGCATTGACCTCAGGCTACCAACCGTGACAAACGGACCGGGCGCAGGCCAGGACTGGGGGCCGGTGGAGCTCACTGCAGTGGTGGCGGGTCCAGTCTTTGTGCTGTGTGTGCTGGTTCTGCTGGGTCTCTTCCTCTTCCAGCACCACCAGCGCGCCTACGGCCACCGGCAGAGGCTGGAGGTGGAGGACCCCAGCACTGAACACATGTTCCTGGCCAAGGACAAGACCTTACAGGATCTCATCTACGACCTCTCCACCTCAGGTTCTGGTTCAGGTCTGCCGCTGTTTGTCCAGAGGACAGTTGCGCGTACCATAGTGCTGCAGGAGATCATCGGTAAAGGGCGCTTTGGGGAGGTGTGGAGGGGGAAGTGGAGAGGAGGAGACGTCGCTGTGAAGATCTTCTCCTCTCGTGAAGAACGCTCCTGGTTTCGTGAAGCTGAAATCTACCAGACCATCATGCTCCGCCACGAGAACATTCTGGGCTTCATTGCCGCCGACAACAAAGATAATGGCACATGGACTCAGTTGTGGTTGGTGTCAGACTATCATGAGAATGGATCCCTGTTTGACTATCTGAACCGATATTCAGTCACCATTGAGGGCATGATCAAACTGGCACTGACGGCTGCCAGCGGCCTGGCACACCTGCATATGGAGATATTGGGCACTCAGGGTAAGCCTGGCATCGCTCACCGTGACCTAAAGTCCAAGAACATCCTGGTGAAGAAAAACTGCACGTGTGCAATTGCTGATCTTGGCCTGGCAGTTCGTCACGAGTCCGTCTCTGACACCATCGATATTGCCCCCAACCAGCGCGTCGGCACTAAGAGGTACATGGCACCTGAGGTTCTGGAAGAGAGTATAAACATGCGTCACTTCGACTCATTTAAATGCGCTGATATCTACGCTCTAGGACTCGTGTACTGGGAGATTGCTCGCCGTTGCAACGCTGGAGGTATTCATGAAGAGTACCAACTGCCCTACTATGATCTGGTGCCCTCTGATCCATCCATAGAGGAAATGAGGAAAGTTGTATGTGACCAGAGGTTACGACCCAACATACCGAACTGGTGGCAAAGCTATGAGGCGTTGCGTGTGATGGGGAAGATCATGCGAGAGTGCTGGTACGCAAACGGCGCTGCGCGACTGACTGCTCTCCGTATCAAGAAAACCCTGTCTCAACTTAGCGTGGATGAAGACATGAAAATCTGAACGGAAACACTACATTCTGCGAGAAAGAGCATAACACTCCTAGGAAAGACAACATGTACAGACATACTACCACTCTAAACTATCCTGCCAGTTTAAAAATTATTTCCGTCCACTGAGTTGTGACGGGGCCTACCTCACCCCACCGCCAAAACTACTGAACCCACGCTACCGTCTCTTCCTCTGAAACGACCTCGGACTGCAAATACTGACACACGTCTACTACTACTACTACCACCGGCCAACTCTGTAATCAAAAATGCGACTTTAATGATTTCTGTTCAAATCAATTCTCCCCAAAGATCATTTTTAAAACCAGGGCCGCTCATATTTAACCCTTCTAACTTCTGGTGAACACAGTCATTTGCTGCTGTGAACTTTTGATGCGGGCTTGTTGCTTTCTCTTAGATCAGTCTAGCAGGATACCTCGGTTAACCAGTTTAAGCTCTAAACTAGGTGGAATATACACACTCCAGTTTAGAGCTGGTAAACAGGGTGAATTGGTTCAAGGTGGACTGATGGCACTGCTTGATGAGCGTGACCGACGTGATCAGCTGTTTTCTTTTCAGTGTTTCATAACCACGTTAAAGCTGTTAGCAAAACAACCTTATTTGCACTTTATTACAGAGGATTCGTGGATTATAGCCATCTTGATTTTTGGAATCACACACTGGCACACACGTCTATTCTTACTACTGAACGGTACGGAGATGTCTATTTATTTTAGCTTGTAGATCCTTCATATTGTCCTTATTTTTTTATCGCCGTTAGATTTCCTTCTCTCCTCCATGGGCAAATAAA

Function

symbol description
acvr1ba Predicted to enable activin binding activity and activin receptor activity, type I. Acts upstream of or within dorsal/ventral pattern formation; fin regeneration; and formation of primary germ layer. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of activin receptor complex. Predicted to be active in plasma membrane. Is expressed in several structures, including DEL; blastodisc; germ ring; margin; and presumptive shield. Human ortholog(s) of this gene implicated in pancreatic cancer. Orthologous to human ACVR1B (activin A receptor type 1B).
acvr1bb Predicted to enable activin binding activity and activin receptor activity, type I. Predicted to be involved in several processes, including activin receptor signaling pathway; cellular response to growth factor stimulus; and protein phosphorylation. Predicted to act upstream of or within phosphorylation and transmembrane receptor protein serine/threonine kinase signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of activin receptor complex. Predicted to be active in plasma membrane. Human ortholog(s) of this gene implicated in pancreatic cancer. Orthologous to human ACVR1B (activin A receptor type 1B).
acvr1b Enables several functions, including ATP binding activity; activin receptor activity, type I; and inhibin binding activity. Contributes to activin binding activity; activin-activated receptor activity; and growth factor binding activity. Involved in several processes, including cell surface receptor signaling pathway; positive regulation of erythrocyte differentiation; and protein phosphorylation. Located in cell surface and cytosol. Is integral component of plasma membrane. Part of activin receptor complex. Implicated in pancreatic cancer. Biomarker of pancreatic cancer.

GO:

id name namespace
GO:0018107 peptidyl-threonine phosphorylation biological_process

KEGG:

id description
K13567 ACVR1B, ALK4; activin receptor type-1B

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000024_08500620_08512420.mRNA True 2231 mRNA 0.50 8 8499822 8512420

Neighbor

gene id symbol gene type direction distance location
CI01000024_08460577_08479254 NA coding downstream 20132 8460469 ~ 8479690 (-)
CI01000024_08450580_08455758 NA coding downstream 42058 8450562 ~ 8457764 (-)
CI01000024_08292984_08380058 PBX1.S, PBX1A, PBX1B, PBX1 coding downstream 119764 8292984 ~ 8380058 (-)
CI01000024_08260814_08264845 SZT2 coding downstream 234977 8260814 ~ 8264845 (-)
CI01000024_08161023_08259943 SZT2 coding downstream 239879 8160290 ~ 8259943 (-)
CI01000024_08604727_08620689 TGM2B coding upstream 91367 8603787 ~ 8620724 (-)
CI01000024_08632171_08642748 QUO coding upstream 119512 8631932 ~ 8642748 (-)
G126187 NA non-coding downstream 66126 8433479 ~ 8433696 (-)
G126179 NA non-coding downstream 79295 8420163 ~ 8420527 (-)
G126172 NA non-coding downstream 93834 8405522 ~ 8405988 (-)
G126163 NA non-coding downstream 108245 8391374 ~ 8391577 (-)
G126097 NA non-coding downstream 132030 8352657 ~ 8367792 (-)
G126210 NA non-coding upstream 290 8512710 ~ 8607995 (-)
G126233 NA non-coding upstream 72636 8585056 ~ 8599810 (-)
G125798 NA other downstream 523775 7975667 ~ 7976047 (-)
G125457 NA other downstream 1141718 7357237 ~ 7358104 (-)
CI01000024_03938368_03941795 NA other downstream 4557898 3938315 ~ 3941924 (-)
G123233 NA other downstream 5944786 2547460 ~ 2555036 (-)
CI01000024_00825386_00837898 NA other downstream 7672971 824968 ~ 838550 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location