CI01000024_08604727_08620689 (TGM2B)


Basic Information

Item Value
gene id CI01000024_08604727_08620689
gene name TGM2B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000024
NCBI id null
chromosome length 8644187
location 8603787 ~ 8620724 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000024_08604727_08620689.mRNA
AGTAGGAGTCAAGCAGTTTGCTCTAAATCTGGAAAATGACTGCAGAAACAAGGCGACAAGCTCTAGATATTGGCACCTGGGATCTGGCGTGCGACTTCAATAACACGGACCACCACACGGAGCTGAACGGCACGGATCGGTTGATCGTACGGCGAGGACAGCCCTTCACCATTAGCCTGTATCTGAACTCTGGCTCTTACCAGCCTGGATCCAGTCAGCTGCACATCACTGCAGAGACAGTGTTTGATACCATTGATCATTTGATTCTCTTGAACCGGTTAAAGCAGTTTGTGGGAATACAAGGTACGGTTCACTCATGGTTTGCTTCTTACTTAGAGCAAAGATCTTTTATAGTGAAGGTTGGCCCTCAGCCTGTGGAGCAGTATGGCACCAGGGCCGTCTTCGGCCTCAGCGATGAGATCGATAGCACGTGTTGGAGCGCCGCAGTGACCAGTCCACCCTGCGACACTGTCTGTCTTTCTGTCTGTGCCGCGCCTGATGCTCCCATCGGCCGGTACATCCTGACTCTAGATGGGCGCATCCAGTTTGAGTTCATACTGCTGTTCAATCCCTGGTGTCCAAGAGATGTGGTGTACATGGACAGCGAGGAGAAACTGGCGGAGTATGTTTTGTCCCAGGATGGCATCATCTTCAGGGGCGATGCCAATTACCCTGTCCCATTAGCTTGGTACTTTGGACAGTTTGAGGAGGGCATACTGGACATTTGTTTCAGAATCCTTGACATGAACCCTAAACACAAAAGGAACCCTGGGAAGGACTGTTCTGGACGAAGAAACGTCATTTATGTCACACGAGTGCTCAGTGCTATGATTAACAGCAATGACAGGGATGATGGGGTCCTGGAGGGCTGCTGGAAAGACACGTTTGAAGGTGGCGTTAGCCCCATGTCCTGGAGGGGAAGTGTTCAGATCCTGAAGACATGGAACAGCACTTCCTGTATGCCGGTGCGCTATGGACAGTGCTGGGTCTTTGCAGCCCTCGCCTGTACAGTGTCTCGCGCTCTGGGAATCCCATGCAGGGTGGTAACAAACTACTATTCTGCTCATGATACCAACAGCAACCTTGTGATCGAGCGTTATGTCAACGAGAAAGGTGAAACGGACAGAAGTTCCAGAGATATGATATGGAACTACCACTGCTGGGTTGAGAGTTGGATGACCCGACCCGACCTCCCTCCGGGTTTTGACGGCTGGCAGGCGAGTGACCCAACACCACAGGAGAAAAGTGAAGGCGTGTTCTGCTGCGGGCCAGTTCCTGTGCGGGCGATAAAAGAGGGAGAGCTCACCTTAAAATATGACGCTCCATTTGTGTTCGCGGAGGTGAACGCAGACTTAGTGTACATCCTGAAGTATAAAGATGGGAGCACAAGAAAAATCGTGAATGACCAAAAAGTGGGACAGAAGATCAGCACCAAGAGCGTGGGCCGAGATGAGAGAGAAGACATCACGCACCTGTACAAATATCCTGAAGGTTCAGAGGAGGAGAGGCAGGTTTTTGAGAAAGCAAACCACCAGAACAAGTTGCAACAGCAGCAAGCAGACACTGGGCTGCACATCACCATCAAGCTGTCGATGGGGATCAGGAAGGGCTGCGACTTTGATGTGTTTGCGATTGTGACGAATAACACAGAGGAGGATAAGAAGTGCCGTCTGGTGTTTGCGTCCCGTGCCGTGTCTTATAATGGAGTCGTCGGCCGAGAGTGCGGATTTAAAGATCTGCTCAATGTGGAACTGGCACCTGGAGGAGAGAGGAAGGTTCCTCTGAGGCTGAACTACAGTAAATACTGTAATAATCTAACGGAGGACAATCTCATCCGTCTGGGCGCTCTGCTGATTGACTACGGCACCAAGGAAGCCGTCATGGCCATGCGTGACATCGTGCTGGAAGATCCTGAGATCAAAATCAGGATTCTGGGAGAACCCAAAGAGAACCGTAAGCTGGCGGCAGAGCTCACCTTACAGAACCCGCTGCCACAACCCTTACAAGGCTGTTGCTTCACCATAGAGGGCGCCAACCTCACGGGCGGCAGCAGCATCACGGAGAAACTGGAGTCAACCATCGAACCTGGGCAGGAGGCCAAAGTTAAAATCTACTTCACTCCCACTCAGTCCGGCCTGCGCAAACTCGTGGTGGATTTTGACAGTGACAAGCTGGGCCACGTTAGAGGATACAGGAATGTTATCATCGGAAAATGAGAGTCTTTGCTGGTGAAAAATGGAATGTGAAATCATCTATTTTCCATGTACTTGTCATTATTCAGAGAGCATTACAATATCTTTTATATACTGTATTTTTCTAAGAATGTGAAAAGCCAAGCCGTTACACTATGTTTCTGGCTTCTGTAGCAGTACATACTATACATGTACAGCATTTTTTAAGCAGAGTAGACAGTATGCAATCTTTTAATTTTTAGGAAACTGAAACATTCACATCCCTGGACTGAATGCTTCTTCATGTTTTTGCTTCAAATATATTTTTTTATATTCAGCAGTGGCTTTTTCATTAAAAAAAATATGCTATAATCTTGGATGGAGTGTTTTCTATCATGTAAAAGGCTCATATCATGAGGAGAATCAAATGTGAATTCTTGAAAATTCTAAGTGAAAAAATTCAATTCTTTAAAAATATAAGCAGCAAAATTGACTCTCAAAAATGAAAATTTATGATGATGTATAGGCCGAATGAGTTATCAGAAACTGGGTCTGTCCACTTATGATTGCAATATGATCCTTAATTTTTAGGCCATTACATTATTATTCCATGAGGTCCTAAAAAGATGACCCCTGTAGCATCTAAATCGATCAAACACACAATTGTAAAAGTAAAACTCCATATAATGCAGACCCATATAATGTTCACATGAGACCTCGGTCACCCAGGCCAGCGCAGCACAAGTGCACAAACAGACCTGTTTGATCTACTTCAAATGATGACCGGAATGCTGTTATCAACATAAACACTAGATGATTACCTCAGCACATAACAATTAATTTGCCAGCAGAGGAAGTCAGAGAAAGTCTTTCTCAAACATTGTTGCTACAGCATGTAAACATTTACATGCAGCAATACAGACTAATCCAATATTTGACATTGTTTTCTGGCCACATTCGTTAATGTTTCATAACAGGTAATAAA

Function

symbol description
tgm2b Predicted to enable protein-glutamine gamma-glutamyltransferase activity. Predicted to be involved in peptide cross-linking. Predicted to be active in mitochondrion. Is expressed in notochord. Orthologous to human TGM2 (transglutaminase 2).

GO:

id name namespace
GO:0003810 protein-glutamine gamma-glutamyltransferase activity molecular_function

KEGG:

id description
K05625 TGM2; transglutaminase 2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000024_08604727_08620689.mRNA True 3156 mRNA 0.46 14 8603787 8620724

Neighbor

gene id symbol gene type direction distance location
CI01000024_08500620_08512420 ACV1B, ACVR1BA, ACVR1BB, ACVR1B coding downstream 91367 8499822 ~ 8512420 (-)
CI01000024_08460577_08479254 NA coding downstream 124097 8460469 ~ 8479690 (-)
CI01000024_08450580_08455758 NA coding downstream 146023 8450562 ~ 8457764 (-)
CI01000024_08292984_08380058 PBX1.S, PBX1A, PBX1B, PBX1 coding downstream 223729 8292984 ~ 8380058 (-)
CI01000024_08260814_08264845 SZT2 coding downstream 338942 8260814 ~ 8264845 (-)
CI01000024_08632171_08642748 QUO coding upstream 11208 8631932 ~ 8642748 (-)
G126233 NA non-coding downstream 3977 8585056 ~ 8599810 (-)
G126187 NA non-coding downstream 170091 8433479 ~ 8433696 (-)
G126179 NA non-coding downstream 183260 8420163 ~ 8420527 (-)
G126172 NA non-coding downstream 197799 8405522 ~ 8405988 (-)
G126163 NA non-coding downstream 212210 8391374 ~ 8391577 (-)
G125798 NA other downstream 627740 7975667 ~ 7976047 (-)
G125457 NA other downstream 1245683 7357237 ~ 7358104 (-)
CI01000024_03938368_03941795 NA other downstream 4661863 3938315 ~ 3941924 (-)
G123233 NA other downstream 6048751 2547460 ~ 2555036 (-)
CI01000024_00825386_00837898 NA other downstream 7776936 824968 ~ 838550 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_031762 tgm2b coding NC_007117.7 CM002890.2 2093206 ~ 2122486 (+)