G123230


Basic Information

Item Value
gene id G123230
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000024
NCBI id null
chromosome length 8644187
location 2528288 ~ 2529219 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU139932
TAATTCTTTATAATTGGGTCATTGATCATGGCTAGAGATAAGTTACTTAAGAACTACTTTATTTAATAACTGGTTTACTTTACAGAAGTCCACCACTGCCTGCTTAAATCTGTTTTTAAAGAGTAGGATGAGCTTTGAAATCTTTAAAACAAATGTTCTACATCACTGCCACATTGCCCCGATGTGCACATATGGAAGAACATTTTATTAGGAGGCAGATTTTAACCCTGAGTAGCGGAGGAAGAGCTCTCTTTCACTCTTAATCCTTACATGGTGACAAAGGCCCTATAATGAAGAGGTCACCGCCAGAACAAAGAGGGAACACAAGCACCACCCCCACCAGTGTTTGCCTTGTCCGTCTGCTGTCATGTTCGGCCTCCCACTAGTGGATGACTGGATTAAAGAAGGTTTCTGAGGTTTATGTTCGCAAAAGAGGAAGGAAGCGCTGAACAAGAGTGCCCAGCACCGAAATCTCACATCTCATTGTAAGAATAAGGACATGAGCTTGAGTTTTGCGACTTTAAATGCGAGTACAAAAGTTGAAAGAGGCTGATTCAGAGAGCGTCAAGCTTCTGTATTAGGAAACAGTCAGTCACCAAATAAAACGTTCACAGCTGAGTTTCTGTTTCACAGATAGAGCAGGGATCGAGGGTAGAAGTCAGCAGCTTCAGACATTGGCTGAAAGAATGTCTGGCCTCCTTCTCCACAGATGTGTAATCACAAAGGAATGCCTGCAGACCGCTCTGCTTTTCCACCGTCCGCTCGTTCTCCAGTCGCTTTCCCACGCCTGCCCCTGGTCTCCAGCCTCCTGCTTTTTTCCTGGCCGAGGTTCACAGCGCATGAACGCACCTCAGAGGGTCACGCTTTCACAAAGGACACAATGCCACTTCAGTCAGCAAAGCAGCGCACAGACCCCAAAATAGAAGCGAATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU139932 True 932 lncRNA 0.45 1 2528288 2529219

Neighbor

gene id symbol gene type direction distance location
CI01000024_02484606_02498687 NA coding downstream 29102 2475874 ~ 2503657 (-)
CI01000024_02421600_02456292 BAZ2B coding downstream 71996 2421600 ~ 2456292 (-)
CI01000024_02402657_02417463 WDSUB1 coding downstream 110227 2402413 ~ 2418061 (-)
CI01000024_02249593_02250941 NA coding downstream 277194 2249593 ~ 2251094 (-)
CI01000024_02170481_02175158 NR4A2, NR4A2A, NR4A2B coding downstream 353130 2169743 ~ 2175158 (-)
CI01000024_02555602_02562403 ZSWIM2 coding upstream 26064 2555283 ~ 2562932 (-)
CI01000024_02597194_02605289 NA coding upstream 67532 2596751 ~ 2605289 (-)
CI01000024_02659912_02681156 NA coding upstream 130441 2659660 ~ 2684099 (-)
CI01000024_02712596_02739960 COL5A2, COL5A2B coding upstream 182654 2711873 ~ 2739960 (-)
CI01000024_02761265_02771248 NA coding upstream 231633 2760852 ~ 2771248 (-)
G123223 NA non-coding downstream 4327 2523688 ~ 2523961 (-)
G123169 NA non-coding downstream 261313 2266289 ~ 2266975 (-)
G123165 NA non-coding downstream 264577 2262793 ~ 2263711 (-)
G123163 NA non-coding downstream 266283 2261803 ~ 2262005 (-)
G123232 NA non-coding upstream 832 2530051 ~ 2530306 (-)
G123229 NA non-coding upstream 6118 2535337 ~ 2538084 (-)
G123225 NA non-coding upstream 9795 2539014 ~ 2542103 (-)
G123235 NA non-coding upstream 27335 2556554 ~ 2556784 (-)
G123247 NA non-coding upstream 50946 2580165 ~ 2580507 (-)
CI01000024_00825386_00837898 NA other downstream 1701437 824968 ~ 838550 (-)
G123233 NA other upstream 18241 2547460 ~ 2555036 (-)
CI01000024_03938368_03941795 NA other upstream 1406823 3938315 ~ 3941924 (-)
G125457 NA other upstream 4828018 7357237 ~ 7358104 (-)
G125798 NA other upstream 5446448 7975667 ~ 7976047 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
mexican tetra (Astyanax mexicanus) G108778 NA non-coding NC_035909.1 CM008312.1 4604694 ~ 4607409 (+)