G123225


Basic Information

Item Value
gene id G123225
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000024
NCBI id null
chromosome length 8644187
location 2539014 ~ 2542103 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU139924
AAGAATCTCATTTGTGTATTTGATCAGTTTGCTTTCACACTGTGTTATGCATTAGTAGCCTTGCACAGCACAGGAAATGAACTCCAAATCCCCCTTGTCAGGCTGAATTTGAAAGCAGTTCCTTTCTCAATGCACATCAAACAAATGAAAATACACTATATAAACACCTAGTTTATTTCTGCCCTCAGGAAAAGACAACCATACCAGAGCTGATTTTGGAGCGGAGCCATTTCTTAATGCAGTCCTGGTGCACATACTGCAGGCTGCCGGTGCACTTGCAGGGCTCGATCAGAGGGTTGGAACTCGACTGCTCCCCCATCTGACAGATTCGGCACAGATCACCCTCCTCCTCATCAGAATCCTCCAAGAGAAGGCTCTCCTGAATCTTTCGCAGTCTCTCTGGGTCTCTGGAGGGGGCGGGCTTGTCTTTTGCCTGCTCCTCAGTTTGACTCCTCCTCTCTGCTCCTACCCCCACACCAATTATTACATTCTCAGGCATACGGAAGAGCGGGCTGGTCATCACCCTGCCAATGCCATGGCTCCGTCCTGCCAGATGGGCTCCGTCCTGCAACAGCGATGCAGAGAGACCTGAGGCTCCAGCAGAGGGTGCAGCTGTAGCGCCCTCTGAGGACTCATCTTCATCATCGTCATCATCTTCACAATGCGTGCCCTGGTCAGGCGTTTTGCGGCCATCTCGGTCAGGGAATTGGGGTGAACGATGAGGGCCCATGCGGGCGCTTTCATCACGCCCTTCCCTCCTGCGACGAGAGAACAGTGGGGTACAGCGGTTCCAGTTCAGCCAGGACAGGCCCGCTTGAGGCCTGAGCGATTCCTGTTCCGGCTCTACATCAGCGCTCTCCTGGACGGGAGCGAGAGATGGTCCGCGTCGGCGCAAGAATGAAAATGCCTGAACGGGATCCGAATTCCTCAGCTCTGCTTCCAAATTTTCTCTACTGACCGGAGGAGGGGCTTCAGAGGGCAGGGCTTCATCTGGGCTCGAGTCAAATGACCTTGAATCAGAGGCAGAGCTGGCAGTGGAGTTTGACTCCTGACTGGAGCGTCGGGAGAAAAGTCGAGATAGCAGGCGCCTGGTTGTTCGCCTGCCATCTGAGTCGCCGCCATTCTGAGCAGGAAGTGGAGTGGGGGCGGGGCTAGATGAAGGTGGGCTGGAGCTACAGCCATTAAGGGGTGTGTAAGGGGTGGAGCTCCAGGATGAGAGGTGGGATGGGTCCGACACAGAGGTGGAGGTTCTGGTGGAGCTAGAGCTGGAGCGTGGTGTATCGCGAGAGAACGGACCAGACTGGTAATCTGTGGTCGGCCTGTGGGAGCTGCGCTCCAGCGGAGAGGGGAGGTACTCGGTTGAGATACGGCGACTAGATGAACTGTTCTCTCTGTGGGATGAGTACTGGCTCTCTTTGGGTCGAGCACCTTGTGCATAGGTGGATGTAACACG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU139924 True 1453 lncRNA 0.55 2 2539014 2542103

Neighbor

gene id symbol gene type direction distance location
CI01000024_02484606_02498687 NA coding downstream 39828 2475874 ~ 2503657 (-)
CI01000024_02421600_02456292 BAZ2B coding downstream 82722 2421600 ~ 2456292 (-)
CI01000024_02402657_02417463 WDSUB1 coding downstream 120953 2402413 ~ 2418061 (-)
CI01000024_02249593_02250941 NA coding downstream 287920 2249593 ~ 2251094 (-)
CI01000024_02170481_02175158 NR4A2, NR4A2A, NR4A2B coding downstream 363856 2169743 ~ 2175158 (-)
CI01000024_02555602_02562403 ZSWIM2 coding upstream 13180 2555283 ~ 2562932 (-)
CI01000024_02597194_02605289 NA coding upstream 54648 2596751 ~ 2605289 (-)
CI01000024_02659912_02681156 NA coding upstream 117557 2659660 ~ 2684099 (-)
CI01000024_02712596_02739960 COL5A2, COL5A2B coding upstream 169770 2711873 ~ 2739960 (-)
CI01000024_02761265_02771248 NA coding upstream 218749 2760852 ~ 2771248 (-)
G123229 NA non-coding downstream 930 2535337 ~ 2538084 (-)
G123232 NA non-coding downstream 8708 2530051 ~ 2530306 (-)
G123230 NA non-coding downstream 9795 2528288 ~ 2529219 (-)
G123223 NA non-coding downstream 15053 2523688 ~ 2523961 (-)
G123235 NA non-coding upstream 14451 2556554 ~ 2556784 (-)
G123247 NA non-coding upstream 38062 2580165 ~ 2580507 (-)
G123256 NA non-coding upstream 82492 2624595 ~ 2624835 (-)
G123324 NA non-coding upstream 236355 2778458 ~ 2779425 (-)
CI01000024_00825386_00837898 NA other downstream 1712163 824968 ~ 838550 (-)
G123233 NA other upstream 5357 2547460 ~ 2555036 (-)
CI01000024_03938368_03941795 NA other upstream 1393939 3938315 ~ 3941924 (-)
G125457 NA other upstream 4815134 7357237 ~ 7358104 (-)
G125798 NA other upstream 5433564 7975667 ~ 7976047 (-)

Expression


Co-expression Network