Gene
RNA
| Item | Value |
|---|---|
| gene id | G123318 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000024 |
| NCBI id | null |
| chromosome length | 8644187 |
| location | 2793014 ~ 2793218 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU140025 | True | 205 | lncRNA | 0.52 | 1 | 2793014 | 2793218 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000024_02771915_02777060 | NA | coding | downstream | 15954 | 2771806 ~ 2777060 (-) |
| CI01000024_02761265_02771248 | NA | coding | downstream | 21766 | 2760852 ~ 2771248 (-) |
| CI01000024_02712596_02739960 | COL5A2, COL5A2B | coding | downstream | 53054 | 2711873 ~ 2739960 (-) |
| CI01000024_02659912_02681156 | NA | coding | downstream | 108915 | 2659660 ~ 2684099 (-) |
| CI01000024_02597194_02605289 | NA | coding | downstream | 187725 | 2596751 ~ 2605289 (-) |
| CI01000024_02829108_02838763 | ATG9A | coding | upstream | 35428 | 2828646 ~ 2839196 (-) |
| CI01000024_02849288_02866286 | NA | coding | upstream | 55882 | 2849100 ~ 2866404 (-) |
| CI01000024_02939122_02964449 | ABCC6A | coding | upstream | 145165 | 2938383 ~ 2964449 (-) |
| CI01000024_03048421_03049271 | NA | coding | upstream | 254946 | 3048164 ~ 3049529 (-) |
| CI01000024_03060967_03068650 | MTX2 | coding | upstream | 267594 | 3060812 ~ 3069706 (-) |
| G123340 | NA | non-coding | downstream | 248 | 2792337 ~ 2792766 (-) |
| G123319 | NA | non-coding | downstream | 1340 | 2791446 ~ 2791674 (-) |
| G123320 | NA | non-coding | downstream | 2618 | 2790176 ~ 2790396 (-) |
| G123317 | NA | non-coding | downstream | 3171 | 2789609 ~ 2789843 (-) |
| G123339 | NA | non-coding | downstream | 3867 | 2788916 ~ 2789147 (-) |
| G123326 | NA | non-coding | upstream | 685 | 2793903 ~ 2794268 (-) |
| G123313 | NA | non-coding | upstream | 1202 | 2794420 ~ 2794822 (-) |
| G123439 | NA | non-coding | upstream | 159318 | 2952536 ~ 2952774 (-) |
| G123446 | NA | non-coding | upstream | 177297 | 2970515 ~ 2970722 (-) |
| G123233 | NA | other | downstream | 237978 | 2547460 ~ 2555036 (-) |
| CI01000024_00825386_00837898 | NA | other | downstream | 1966163 | 824968 ~ 838550 (-) |
| CI01000024_03938368_03941795 | NA | other | upstream | 1142824 | 3938315 ~ 3941924 (-) |
| G125457 | NA | other | upstream | 4564019 | 7357237 ~ 7358104 (-) |
| G125798 | NA | other | upstream | 5182449 | 7975667 ~ 7976047 (-) |
