G123798


Basic Information

Item Value
gene id G123798
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000024
NCBI id null
chromosome length 8644187
location 4117550 ~ 4121505 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU140573
TGATGCTGAAAACAGGAATAAATTACATTTTTATATATAAATTACATTAAAATATATTACAATACAAAATTAATATGATTACCATCTTTAAAAGTGTGAGTTTAATATTTTGTCCAATATAATGGGGACATGAAAATGTACTGCACATAGTATAAATGACATCAGCTGACATGTCCACTCTCCATTTCTAAAAGAAAACGTGATAAATACAATTTAAAAGCATCATAAATCACAGTCAGCTTTCCCAAGACAGCTTTATATGAATATGTTCATATTCATTCACCCTTGCGGTAAAAATTCGGAATGCGCTTTACCCTTGTGACAGTGTTTTAGATTGTATTGCAGTTGTACAGACGGGCCATGCACCTCCAAACCACAAGAGTGCATCTGTGGTTTGTCCCAGCTCTGTCTGCATTCAGGGCAGCAATAAAAGACAAACCGATCCGATGACTCCCTCAAGGTATATCTAACCTGATTCTGCGTGTCTGTGTTCTCATCTGTCAACTTGACCCAACTGTGACTATTGAGTTTTATATAGCTCTTGTTTAACTATAAATCTTGACTTCATTATGCCTGTAGACCTCAGGGTTTGTCTTTACCTTCCTCTCTTCAGGACAAAATATGAATGATTTAAGGGAGGAACAGATCCAGGCAAGGGCAAATCAGACACCAGAGTGAGTCTTCAACTCTGCACGTTTACCTGCTAACCAGCATGTACAACGCTCCACAAGGACAGCCGGATTAGAAGATGCATTGCAGTCTACAACTTACTCTACAAGAATTACTCTACCAGATGAAATGCACACATTAGATCTTTTAATTCTGTATTATTTAAATAAATATTGTGTTTGTGGTATGTTGATGATCCAGTGATAGGGGAACAGTCTGTAATCCCACGAGTGAAATCAGTAAACTGGAAGAAAAGCCTCTGTTCTACTGTGTCAATGCTAACAAACAACGGCTATGTATTTTTAAAAAACAATGACTGAAAAACACCTTCTTTCTTGGTGACTTTAAATAAGAAGAGAAATGTTGAGGAACCCAAACCGTCTTACTCTTTGTTACCATGGCTTCCAGATGTTTCATTTATTATTTGTTTTCTTGCCTTTTACTTTCTGATGGTTTTGACATTTCTCTGTACCTCTTG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU140573 True 1147 lncRNA 0.37 2 4117550 4121505

Neighbor

gene id symbol gene type direction distance location
CI01000024_03964560_03976364 VPS16 coding downstream 141186 3964254 ~ 3976364 (-)
CI01000024_03957940_03962240 RGN coding downstream 155310 3957504 ~ 3962240 (-)
CI01000024_03950623_03954365 NA coding downstream 163158 3949910 ~ 3954392 (-)
CI01000024_03945597_03947286 NA coding downstream 170264 3945535 ~ 3947286 (-)
CI01000024_03938368_03941795 NA coding downstream 175755 3938315 ~ 3941924 (-)
CI01000024_04128028_04128273 NA coding upstream 5564 4127069 ~ 4128528 (-)
CI01000024_04244945_04245709 NA coding upstream 122783 4244288 ~ 4245767 (-)
CI01000024_04262881_04279056 USP40 coding upstream 141048 4262553 ~ 4279217 (-)
CI01000024_04280957_04294789 TSPEARA coding upstream 158929 4280434 ~ 4294789 (-)
CI01000024_04306066_04310552 UBE2G2 coding upstream 184139 4305644 ~ 4310552 (-)
G123835 NA non-coding downstream 5730 4111496 ~ 4111820 (-)
G123837 NA non-coding downstream 37831 4079375 ~ 4079719 (-)
G123833 NA non-coding downstream 60768 4056577 ~ 4056782 (-)
G123822 NA non-coding downstream 74401 4042891 ~ 4043149 (-)
G123812 NA non-coding downstream 93490 4023786 ~ 4024060 (-)
G123918 NA non-coding upstream 201337 4322842 ~ 4323121 (-)
G123919 NA non-coding upstream 201619 4323124 ~ 4323354 (-)
G123751 NA non-coding upstream 205366 4326871 ~ 4331708 (-)
G123929 NA non-coding upstream 285789 4407294 ~ 4407896 (-)
G123936 NA non-coding upstream 324898 4446403 ~ 4446703 (-)
G123233 NA other downstream 1562514 2547460 ~ 2555036 (-)
CI01000024_00825386_00837898 NA other downstream 3290699 824968 ~ 838550 (-)
G125457 NA other upstream 3235732 7357237 ~ 7358104 (-)
G125798 NA other upstream 3854162 7975667 ~ 7976047 (-)

Expression


Co-expression Network