Gene
RNA
| Item | Value |
|---|---|
| gene id | G124980 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000024 |
| NCBI id | null |
| chromosome length | 8644187 |
| location | 6715908 ~ 6716180 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU141870 | True | 273 | lncRNA | 0.40 | 1 | 6715908 | 6716180 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000024_06451305_06495178 | NA | coding | downstream | 217478 | 6451112 ~ 6498430 (-) |
| CI01000024_05986174_06002425 | NA | coding | downstream | 713099 | 5985732 ~ 6002809 (-) |
| CI01000024_05879244_05880952 | NA | coding | downstream | 834594 | 5878709 ~ 5881314 (-) |
| CI01000024_05749044_05807817 | NA | coding | downstream | 907827 | 5748897 ~ 5808081 (-) |
| CI01000024_05422777_05445492 | TRAK2 | coding | downstream | 1270416 | 5422777 ~ 5445492 (-) |
| CI01000024_06867041_06878399 | NA | coding | upstream | 150861 | 6867041 ~ 6878813 (-) |
| CI01000024_06889558_06901776 | MTIF2 | coding | upstream | 173267 | 6889447 ~ 6902501 (-) |
| CI01000024_06909681_06921880 | CCDC88AA | coding | upstream | 193142 | 6909322 ~ 6921880 (-) |
| CI01000024_06944906_06955771 | NA | coding | upstream | 227782 | 6943962 ~ 6955771 (-) |
| CI01000024_06987928_07001260 | CEP170L | coding | upstream | 271276 | 6987456 ~ 7001358 (-) |
| G124965 | NA | non-coding | downstream | 19135 | 6696543 ~ 6696773 (-) |
| G124961 | NA | non-coding | downstream | 22187 | 6693450 ~ 6693721 (-) |
| G124946 | NA | non-coding | downstream | 51762 | 6663799 ~ 6664146 (-) |
| G124945 | NA | non-coding | downstream | 54792 | 6660879 ~ 6661116 (-) |
| G124931 | NA | non-coding | downstream | 78401 | 6637273 ~ 6637507 (-) |
| G125011 | NA | non-coding | upstream | 36735 | 6752915 ~ 6753141 (-) |
| G125020 | NA | non-coding | upstream | 45075 | 6761255 ~ 6761888 (-) |
| G125309 | NA | non-coding | upstream | 48008 | 6764188 ~ 6764891 (-) |
| G125312 | NA | non-coding | upstream | 60272 | 6776452 ~ 6776668 (-) |
| G125344 | NA | non-coding | upstream | 136420 | 6852600 ~ 6852895 (-) |
| CI01000024_03938368_03941795 | NA | other | downstream | 2773984 | 3938315 ~ 3941924 (-) |
| G123233 | NA | other | downstream | 4160872 | 2547460 ~ 2555036 (-) |
| CI01000024_00825386_00837898 | NA | other | downstream | 5889057 | 824968 ~ 838550 (-) |
| G125457 | NA | other | upstream | 641057 | 7357237 ~ 7358104 (-) |
| G125798 | NA | other | upstream | 1259487 | 7975667 ~ 7976047 (-) |
