G125374


Basic Information

Item Value
gene id G125374
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000024
NCBI id null
chromosome length 8644187
location 7029690 ~ 7031113 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU142338
CGGCATATCCGGCCAGCCACTGAGAGTACACGTTTTCTGAGTTGGGGATTGTAGGAGTTGGAAGATCAAGGTCTTTTTCCACCTTGATGCGTTTGGAGAGAGGGCTGTCAGATCCTGGACTTCTGGCAAGAAGTTTTCTCGAGAGGTCATCGTTTGGGTAGGAGGCTGTTCCATTTACGATGGGTTCATAACCCTCGTTGACTTGATCAGACTCTTTTGGGGAATCGTCACAACCTGTCTCACTAGCTGATCTGTGGTCCCCTCGTTTGTAAAGTTTTAGGGCATCTCGATAGTCCTGAATTCCCTCCACACTTTTGTTGTGTCGCTGTCTATTGTTCTCGTGGTGACGTGCACCTTCTAGGCTCAAGCTAAATTTTATATCATTCCTCTCGCCGACCTCACTCTCCTCCTCCTCCTCCTCTTCCTCTTCATCTTCGTCATCTTCCTCTTGTCCATTTTCTGGGATTATGCCGTTGTTCTCACTTTTAAACTTTGCCACCACGGATTTGAGAGCATTGGTGGCACTGCTTAGCAGATCACTTGTGCCTGGCTCAGGTGAACTGGCAGTTGAAAGGCCATCATCAGATTTGGAGGTAGTGGAGGAGGATTTGTGCCGATGAGTCTTCATGTGGCGCTTCAACTTGCTGGCCTGGGTGCAGGCATGGTTGCAGAGGTGGCACTTGTAAGGTTTCTCTCCGGTATGACTGCGCCTGTGGACGATTAAGTTGCTCTGGAACTTAAAAGACTTTCCACAAAACTCACAAGACTTTGCCTTCACAGTTGGCATGGTTGGCGTTTGTTGAGTGGGTGTTGAATGAGGTCCAGAAGGAGAATGAGATGCCCCTGGCTGGAATGGCTGCAACAGCCTTTGCATAGGGCTAGGCCTGTTGGGCGACATGGGCGGAGAGGAGCCAGCAGAGTTGCCTGCAAGTTCCCGTAGTCGTCTCGAGAAGTCCATAGATGGGGAGTCCAAGGGTACCGAATTAAGACGCAGTACCCTGTCAAAGGCGCTTGGGTGGTGGGGGGCCAAAGCCAGATCATCTGGGCTCATGTGATGCCGTGGTGGGGGACTAAAGAGTGGAGGTGTCCTGGGATATCGGCCTTCCCTAGGAACCGAGGACCCATCTCTGTTGGCTATCCTCATCAGGCTATAGGGACTACTGTCTGCAAGGTGGGCTGCATGCAGCGGTGGCTGTGAGGCACAGTCACCACCCATGCCTGGAGCGGAGGCCACCCGAGGAGTTAACGGGCTTCCAGGTTCACTCTCCAGATATATTCGGAAACCATGAGTATTCTGGGCATGCTGTAGCAGGAACCAAGCAGTGCTGAAGGGCTGCTTACAAGTTGTGCAAGTGTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU142338 True 1358 lncRNA 0.52 2 7029690 7031113

Neighbor

gene id symbol gene type direction distance location
CI01000024_06987928_07001260 CEP170L coding downstream 28332 6987456 ~ 7001358 (-)
CI01000024_06944906_06955771 NA coding downstream 73919 6943962 ~ 6955771 (-)
CI01000024_06909681_06921880 CCDC88AA coding downstream 107810 6909322 ~ 6921880 (-)
CI01000024_06889558_06901776 MTIF2 coding downstream 127189 6889447 ~ 6902501 (-)
CI01000024_06867041_06878399 NA coding downstream 150877 6867041 ~ 6878813 (-)
CI01000024_07117698_07119483 NA coding upstream 86003 7117116 ~ 7120003 (-)
CI01000024_07131727_07169937 SEMA5BB coding upstream 99900 7131013 ~ 7169937 (-)
CI01000024_07239312_07251354 DC1I2, DYNC1I2, DYNC1I2B coding upstream 206429 7237542 ~ 7251865 (-)
CI01000024_07293038_07298458 GORASP2 coding upstream 261736 7292849 ~ 7298458 (-)
CI01000024_07300290_07303945 NA coding upstream 268230 7299343 ~ 7305514 (-)
G125318 NA non-coding downstream 44087 6983629 ~ 6985603 (-)
G125356 NA non-coding downstream 63694 6965785 ~ 6965996 (-)
G125355 NA non-coding downstream 64101 6965350 ~ 6965589 (-)
G125315 NA non-coding downstream 141533 6885162 ~ 6888157 (-)
G125348 NA non-coding downstream 147695 6881747 ~ 6881995 (-)
G125379 NA non-coding upstream 11286 7042399 ~ 7042692 (-)
G125425 NA non-coding upstream 70572 7101685 ~ 7101920 (-)
G125385 NA non-coding upstream 82030 7113143 ~ 7114886 (-)
G125389 NA non-coding upstream 97709 7128822 ~ 7130004 (-)
G125386 NA non-coding upstream 253825 7284938 ~ 7286936 (-)
CI01000024_03938368_03941795 NA other downstream 3087766 3938315 ~ 3941924 (-)
G123233 NA other downstream 4474654 2547460 ~ 2555036 (-)
CI01000024_00825386_00837898 NA other downstream 6202839 824968 ~ 838550 (-)
G125457 NA other upstream 326124 7357237 ~ 7358104 (-)
G125798 NA other upstream 944554 7975667 ~ 7976047 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_031809 bcl11ab coding NC_007117.7 CM002890.2 6491013 ~ 6541519 (+)