XLOC_008380 (si:ch211-105f12.2)


Basic Information

Item Value
gene id XLOC_008380
gene name si:ch211-105f12.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 15375607 ~ 15381879 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016788
ATATGGGTGTTTGCTAACCACCTGCTTGCCTGCTGAGGGGACATCGGCGGAGCAGAAGCAAGCACAGAGGAAGCAAACTGGAATGATCGGGCTGGATGTTTATCTGGATCCGGATGGTCTTCGGGTCGCTACACCTGAAGATATAGAGCAGTGGGAATCAGAGAGGGAAATGTATGACCCGAATGTGCGCCTCTTTGTGGCTCTTTTCTCATACAATCCTGCACTGATGTCACCAAACCCAGAAACTATGGAGGAGGAACTGCCTTTTGAACAAGGACAGATCATCAAAGTTTATGGAGATAAAGATGCAGACGGCTTCTATAATGGAGAGACGGGTACTCGATGTGGTTTTGTACCAAGCAACATGGTGTCTGAGATTCCTGTGGAAGACGGGGAGATTAAACTTCGTCTGATCCAGCAGGGTTTTTTACCTGAGGAAACACCTTCTATAGCACCCAGTGAGACTTCCAGTGCGCCAGATGGAGAGAAGGTCCACAGGATGGTGGCCATCTTTGATTATGATCCTTGGGAAAGTTCTCCAAACATAGATATCGAGGACGAGCTTCCCTTCCGTGCAGGAGACATCATATATGTTTTTGGGGAAATGGACTGTGATGGATTTTATTATGGGGATCTTCATGGGTATCGAGGTCTGGTGCCATCAAACTTTTTGCAACCTCTGCCTTGGGATTAAAGGAAATGAACAATCAGAAATCAGGAACAGGAGATTGAACTCAGATTGAGAGCGTGACAAACTGCAGTCTtgcttttaattttcttttcacttTTTAACAATATAATGTGTCTTGTTTCCTACAATGTACATGACAGTATAATGTGCTCACTAACCTTAGCATAGGTTAAGTACATTAAAGGGAATTAGATTTTGATTAATACAAAAGATTTTCAGAAGCAGCTTGCATATAGCCTTAAAACATTATGTTCATTTAATAACTGTCGTTTTatactttttgtcttttttaatagCCAGCCTATTGAAAAGGGTGGTACTTATTTCTC

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-131127-333 No description available

Ensembl:

ensembl_id ENSDARG00000090126

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016788 True 1020 mRNA 0.42 5 15375607 15381879

Neighbor

gene id symbol gene type direction distance location
XLOC_008379 NA coding upstream 24150 15347642 ~ 15351457 (+)
XLOC_008378 camkk1b coding upstream 44106 15314189 ~ 15331501 (+)
XLOC_008377 c2cd3 coding upstream 63839 15258758 ~ 15311768 (+)
XLOC_008376 med29 coding upstream 138396 15232855 ~ 15237211 (+)
XLOC_008375 si:ch211-149e23.4 coding upstream 156651 15173611 ~ 15218956 (+)
XLOC_008381 ca4b coding downstream 9003 15390882 ~ 15401917 (+)
XLOC_008382 dhrs11b coding downstream 21681 15403560 ~ 15408113 (+)
XLOC_008383 zgc:92630 coding downstream 33744 15415623 ~ 15437530 (+)
XLOC_008384 NA coding downstream 68924 15450803 ~ 15452516 (+)
XLOC_008385 zgc:174895 coding downstream 74657 15456536 ~ 15460133 (+)
XLOC_008463 BX663520.1 misc downstream 5870312 21252191 ~ 21252282 (+)
XLOC_008368 NA non-coding upstream 1125678 14249389 ~ 14249929 (+)
XLOC_008363 BX927244.2 non-coding upstream 1322141 14045121 ~ 14053466 (+)
XLOC_008361 CABZ01056919.1 non-coding upstream 1417757 13957722 ~ 13957850 (+)
XLOC_008360 CABZ01009247.1 non-coding upstream 1850619 13524874 ~ 13524988 (+)
XLOC_008388 NA non-coding downstream 247627 15629506 ~ 15665686 (+)
XLOC_008390 NA non-coding downstream 397109 15778988 ~ 15782552 (+)
XLOC_008393 NA non-coding downstream 605175 15987054 ~ 16018789 (+)
XLOC_008394 BX511308.1 non-coding downstream 653990 16035869 ~ 16045504 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000154_01316706_01317237 NA coding CI01000154 null 1316681 ~ 1317421 (-)