CI01000026_11862091_11976290 (PTPRN2)


Basic Information

Item Value
gene id CI01000026_11862091_11976290
gene name PTPRN2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 11862091 ~ 11976290 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000026_11862091_11976290.mRNA
GGATATACTTGGCAGGATGACACAACACAGGAGGTAATCTCCAAAGAGCTCTCACAACTACCCAAGGTTCCTCTTGGAGGATTTACAAACACCTTTTCTCGTTTCAATGGCAATTCCAGGAAGCTAAAGGCTCAGAAAGAAGAACTGAGCAGGACACTGCAAAGGTACCTTCAAGGTTTCCTGCCTTCTGATGTTGCCTCCTTCAAACAGAGTCCTCAAGGGCAGCAAGTGCTTTGGAAGGGAGATGGACCCCGTAATCATAAGAGTTTTATGCAGCTCAAAGAGAAGCCTCCTTCACCCCACGTCTCCTTCCTACAAGGCCGTCCTGATCTCCAGGCCATTGTGGAACAGCCTCCCCCAGGTCAATCATTCTTCACTGGTTTTGAACAGGATCGTACTGGAGTCCCGCTTGCTGAGCATCAGCGGTATCAAGCTGGGCCCATGAGAGCACAAGATCCCGGTAAAGGTCAAACACAGGGAAAGCTGCGTTACTTCAGCCTTCAGCGCACTCCTGCTACCAAAATAGAAAAACTGCCAGGAGCTTCCAAGCAACCTCCAAAGCCCCAAATCGAAAAATTGTTTTTCAAATCTTCAGCGAGCAGCCCTGCTTACAAGGAGGCCCTTAGTTCAGTAGATGAGAATTTCATTGACGGAGTGGTTAACCAGCTCGGCCGTCAGAGCGTCAATGTGGATACTTTAACCCCAAAGGACCTGGACCAGCTCTCCAAGGTCATTACCCAGGCCCTGCAGGTGGTGGATAGAGTGGAAGGGGTCACACAGGATGAAGTGGAGGTGAAGAGGGAACCCAGTCAAGAGATACATCAGATGGAGAACCTAGAAGACATCACCACACATGAAGGTAGTAACCCCTTAACAAAGACAAATATTTGTTTGGTAATTTTCTATTTCCAGGACAAAGGTTTTATCAGCCAGCTGCTTGAGTTCCTGGATCATAACTCTGGCCATAGATCTGCTCGTCCTCCCCAAGCAGAAGAGCCTTTTCTGGGGTACATCAACCAGCCAAATGCTGGAAGCCCATTGAGAGCTAGTTTGGAGAACGTCCAGAGCCGGACAACGCAAACAGACCTGGACCTGATGAGGAAGAAAATGGAACCTGACACTTTGGCTATAGAGCCAATGGTGGACGCTGAGGTAGAGCAGTGGATGCACGGTACTGAAGCCTCTCCAGAAGTAAAACCAGAGGTTCAACCAGGAAAAATGCCACAAAAAAGTTCCATGGAGAAAGAGGAGGTGGAAAAGAAGGGTGTGAGAGTGGAGGTGGATATTTCAGCATATTCAAGTCCACATGACGGTGACTTTGGATATATTATTACTGAAGATTCCCTGTCCACTGATCAGGGGCTGAAACTCATGGAGCACTTAGCTGAGAGAGTTAGCCTTCATGTAACAGATTTTCTACAACTCTCGGTTCTGGGTCCAGCAGTAACCTTTCGAGTGCGCCCCAATGCTCGAAACATCAGCACAGCCCAGCTAGCCAGAGTGGCAGTTGAGCAGAAAGGACAGCTGGAGAAGGAGAGTGGTCTGCAGATTCTTGAGGCTGGACTGAGTGATAGGGGCAAACTAAACCACATCCCCCTGGTCAAAAAAAGTCAAGTGGAACCAGGCAACTTTTTGATTCTGGTGGTGGTCTCCATGGTTTTTATTGTCATGGTTTTGGGGATGTCGGGGGCTCTGTACTGCTTGCGCCACCGCTCCCACCATAAGCTGAAGGAGAAGCTCGTTGGTTTGGGAAATGACACAGGCCACGATGCCACGGCAGCCTATCAGGATCTCTGTCGGCAGCGCATGGCGGTGCAGACATCAGAGCGTGGAGAGCGATCAGAGGTGTTCCACCCATCGCACACGTCACGCATTAACAGCGTGTCCTCACAGTTCAGTGACGGACCAATGCAGAGTCCCTCCGCCCGCAGTAGCACATCCTCCTGGAGTGAGGAGCCTACCCAAACCAACATGGACATCTCCACTGGTCACATGATACTGTCGTATATGGAGGATCACCTGCAGAATAAGGATCGTTTGGATAAGGAGTGGGAGGCTCTCTGTAGTTACCAGGCTGAGCCAGCAGCATGTGCGGTGGGTCAGGAGGAACAGAATGTCCAGCGCAACCGCCCACACGGCGCCCTTGTGTATGATCATTCCAGAGTCATCCTGAAGCAAGAGAATAACCAATCCAGATCTGATTACATCAACGCGAGTCCCATTATGGACCATGACCCCCGAAATCCAGCCTATATCAGCTCTCAAGGTCCTCTTCCCTCCACTGTGGCAGACTTCTGGCAGATGGTTTGGGAGAGTGGCTGTGTGGTGATTGTCATGCTGACACCTCTTGCTGAAAACGGCATCAAACAGTGTCATCAGTATTGGCCTGATGAAGGGTCGGACCTCTACCACATATATGAGGTAAATCTGGTCTCAGAGCATATCTGGTGTGATGATTTCCTGGTGCGCAGTTTCTACCTGAAGAACGTCCAGACTAATGAGAGCCGCACAGTCACTCAGTTCCACTTCTTGTCCTGGATGGACCAGAATGTTCCAGAGTCTGCTAGAACCTTGCTGGATTTCCGCAGGTATGTGTCCAGCTACTATATTTCAATGGGATGT

Function

symbol description
ptprn2 Predicted to enable protein tyrosine phosphatase activity. Predicted to act upstream of or within protein dephosphorylation. Predicted to be located in secretory granule; synapse; and transport vesicle membrane. Predicted to be integral component of membrane. Is expressed in brain. Human ortholog(s) of this gene implicated in prediabetes syndrome and type 1 diabetes mellitus. Orthologous to human PTPRN2 (protein tyrosine phosphatase receptor type N2).

GO:

id name namespace
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K07817 PTPRN; receptor-type tyrosine-protein phosphatase N

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000026_11862091_11976290.mRNA True 2622 mRNA 0.50 15 11862091 11976290

Neighbor

gene id symbol gene type direction distance location
CI01000026_11809092_11810238 NA coding upstream 51680 11808462 ~ 11810411 (+)
CI01000026_11792044_11807684 NCAPG2 coding upstream 53817 11792044 ~ 11808274 (+)
CI01000026_11756587_11788914 ESYT2B coding upstream 73019 11756587 ~ 11789072 (+)
CI01000026_11705009_11707949 NA coding upstream 154015 11705009 ~ 11708076 (+)
CI01000026_11698637_11702653 MAF1.L, MAF1 coding upstream 158442 11698637 ~ 11703649 (+)
CI01000026_12074163_12076475 MNX1 coding downstream 97523 12073813 ~ 12077540 (+)
CI01000026_12094316_12125431 NA coding downstream 118026 12094316 ~ 12126264 (+)
CI01000026_12192269_12200366 NA coding downstream 215362 12191652 ~ 12200734 (+)
CI01000026_12203244_12209526 SHH, SHHA coding downstream 225068 12201358 ~ 12209698 (+)
CI01000026_12425699_12438163 NA coding downstream 447789 12424079 ~ 12438621 (+)
G133608 NA non-coding upstream 109916 11751165 ~ 11752175 (+)
G133596 NA non-coding upstream 128086 11733745 ~ 11734005 (+)
G133594 NA non-coding upstream 129277 11731811 ~ 11732814 (+)
G133572 NA non-coding upstream 203002 11658530 ~ 11659089 (+)
G133564 NA non-coding upstream 259205 11602202 ~ 11602886 (+)
G134120 NA non-coding downstream 29580 12005870 ~ 12032406 (+)
G134197 NA non-coding downstream 167219 12143509 ~ 12143787 (+)
G134201 NA non-coding downstream 174229 12150519 ~ 12150775 (+)
G134215 NA non-coding downstream 218894 12195184 ~ 12195417 (+)
G134217 NA non-coding downstream 220211 12196501 ~ 12196758 (+)
G133542 NA other upstream 385184 11476117 ~ 11477544 (+)
CI01000026_11241496_11246081 NA other upstream 607018 11241496 ~ 11246204 (+)
CI01000026_11075931_11078249 MDK, MDKA other upstream 783011 11075784 ~ 11079080 (+)
G133192 NA other upstream 1700130 10159819 ~ 10161961 (+)
G132667 NA other upstream 2292931 9568739 ~ 9569160 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location