CI01000026_12486292_12534245 (SCRIB)


Basic Information

Item Value
gene id CI01000026_12486292_12534245
gene name SCRIB
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 12485886 ~ 12534327 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000026_12486292_12534245.mRNA
ATATATATAGAGAGAGAGAGAAATGTTTATTCAAAATTTTGTTCACATGCTGTTCACATCCTTCATTTTTATTTTGCATCCATCTTCTCTTTTTACAAAAAGTTTGATGTTTTGTTCTTTTGTACCAGTGAATCAGAATTTCTGTTCAGATACACAAGCAACCACACACACCGCAGTATCAGCCTTGTTCTTGGCAGTAGATAGTAAGCCCTCTGTTGGTGCTGTTCAGCAGCCAGCCCAGCACGCAGAGAGGAGAGGGCATGATGGGCCACAGCAGCAGGAATGTACTGAATGCGACCAGCTAACAAGCGAGCTCTTGATAGAGAAGACGGATGTTTAAACACTGACACGCACACTTTTGCCTTCCCTTTAAATGATTGTTAGTTGTTTAGATAAGTGTTTGGAGATGAGCTGTTGTCAGATTGTTGAGTATTGGTCATTAGTTTCTCCTGACTTGAAGCCTTTCTTCAAACTGCACAATTTGCGAAAGCTGGGCCTCAGTGACAACGAGATTCAAAAATTGCCGCCCGACGTTGCCAACTTCACACAGCTGGTGGAGCTGGACATCTCCAGAAATGCCCGAGGCACATTTACTGTTAGTCTCAGGATTGAATGTGGGAATGTTGAACATGTTGGTCTGTATTTAGACTATGCAGTGTTATATTCTGCAACTCAGCAGACGAAGCAGCTCTCACTGGGTCCTGGATGTGTGGCTCAGATCCCATATAATGCACACATGCACATACAGACAACTCTCACCACAGTCAAATCACCCTCTCCTCCCATTCCTTCAGGCCATCTGGCCTTGGAGATTGCAGACTTCAGCGGAAACCCCTTGACCAGGTTGCCTGATGGCTTCACACAGCTCAGAGGACTGGCTCACCTATCACTCAATGACGTGTCACTGCAGTCTCTACCCAATGACATAGGAAACTTGTCAAACCTGGTGACTCTAGAGCTGAGGGAGAATCTACTGAAATCTTTACCTTCCTCTCTTTCCTTCCTGGTTAAACTGGAACAGCTGGATCTGGGCAGCAATGTACTGGAAGTTTTGCCTGACACACTTGGGGCACTGCCCAATCTTCGTGAGCTGTGGTTGGACAGAAACCAGCTCTCCTCACTACCTCCTGAGCTGGGCAACCTGCGGCAGCTGGTTTGCTTGGACGTGTCAGAGAACCGTCTATCAGAGCTTCCCACAGAGATCAGCGGCCTTATCGCCCTCACAGACCTGCTGCTCTCCGAGAACCTCCTGGAAGTCTTGCCGGACAGCATTGGCTCGCTTAAGAAGTTGTCGATTCTGAAAGTGAACCAGAACCGCTTAGTACATCTCACAGACTCTCTTGGCGAGTGTGAGAACCTGACAGAGCTCATGTTGACTGAGAACCTTCTCCAGTCCCTCCCTCGCTCACTCGGGAAGCTGAAGAAGTTGACCAACTTGAATGTGGACCGAAACCGCTTGAGCAGCGTCCCAGCAGAGCTGGGGGGATGTGTCAGTTTGAACGTGCTCTCCCTCAGAGATAACCGCTTGGGAAAGCTACCTGCTGAGCTCGCCAACGCCACAGAATTACACGTGCTGGACGTGGCAGGCAACAGGTTGCAGAACTTGCCATTCGCATTGGCCAATCTGAACCTGAAGGCCATGTGGCTGGCGGAGAACCAGTCTCAGCCCATGCTGAAATTCCAGACAGAGGATGATGAGCGGACTGGGGAAAAAGTTCTCACCTGCTACCTGCTGCCCCAGCAACCCTCATCAAGCCTTGAGAATCTGTTGGACAGGAGCGCTGATGAAACCTGGCCCACAGACACTAATTTGAACAGGGTATCAGTCATTCAGTTCCGGGATGACTCCAAACACGAAGAGGAAGATGAGGAGACTGCGGCAGAGAGGAGGCAGGGTCTTCAGAGGAGAGCCACACCACATCCTAGTGAGTTAAAGGTGATGAAGAATGTCATTGAAGCCAGAAGAAATGAGGCATATACAGCCAAACCAGATGAGGATCTGGAGTCCCCAGACTCTGAGGAGAAGCGGTTGAGTGGGCTGTCCAATCAAAGTCATGATTCTCAGGCTTCCAGTAGCACCGCCTCGGCCACTTCTCAGGACGAGAAGCGGGCTATAAACAGTACAGGGATGGAGCTTAATAATGGACAGGGTCAAGAGGAGGAGGAGCTAGATGAGATGGAGGTGGAGTATTCTGAGAAACAACGGCTCATACGTAAAGACACACCACACTACAAAAAGCACTTCAAGATCACCAAGCTGCCCAAACCCGAGACTGTCGCCGCCCTGCTGCAAGGCTACGGTCATGACGGCCTGTCACCTACTGCTCACACCCCTGAGGACGAAAGGGATGGTGATGGGGTGTCATTTGATCAAGTCAATAATCTGCTGATTGAGCCTGCTCGAATTGAGGAGGAAGAGCTGACCCTGTCCATCCTGAGGCAGACTGGTGGGTTAGGCATCAGCATAGCAGGGGGGAAAGGATCTACGCCCTATAAGGGTGATGATGAGGGTATTTTCATTTCTAGAGTGTCAGAAGAAGGCCCTGCAGCTCGTGCTGGGGTCAAAGTGGGAGACAAACTTCTTGAGGTGAATGGAGTAGACCTGCACGGAGCGGAGCATCACACAGCTGTTGAGGCCTTACGTAACTCGGGGGCAGCCGTGTCTATGACCGTTCTGCGGGAACGCATGGTGGAACCAGAGAACGCCATCACCACCACGCCGTTGCGACCAGAAGATGATTATTTCCCCCGGGAGAGACGGTCCAGTGGGCTGCCTTTCCTCCTGGACCCTGCCTCACCTGCTGTTAGCACTGGACCTTCACAGCGACTAGCCACTTGTCTGATCCGCAACGATAAAGGTTTAGGTTTCAGCATTGCTGGAGGGAAAGGGTCAACCCCGTACCGAGTAGGAGACACGGGAATCTTCATCTCTCGTATTGCTGAAGGAGGAGCTGCTCACAGAGACAACGTCCTGCACGTGGGAGACAGGGTCATATCAATCAATGGTGTAGACATGACAGAGGCCAGGCATGACCAGGCAGTAGCGCTGCTTACTGGCACCTCCCCCACCATCACCCTCCTGGTCGATCGGGACCAGGCCAGTGCAGGGGGCGCCTCCCCTCGAACGCGACCTCATTCACCCCCTCCTCCAGAGCCATCTGACTCACCTGAGCAAGAGGAAGGAGACGAGCACCTTGGAAACCATCTCAACTGTCCCATGGAAGATGAATACCCCATTGAGGTGCGAACTCTAACTAAAAGTGTGGCAGAAGTGACGCTGATCAAAGCGGGTGGTCCCCTGGGTTTGAGCATTGTAGGGGGTAGTGACCATGCCAGTCACCCGTTTGGAGTTAATGAGCCAGGGGTGTTCATCTCAAAGGTCATCCCCAATGGCTTGGCCTCTCAGAGTGGACTTCGTGTGGGTGATCGTATCTTGGAGGTGAACGCCATCGACCTGCGACATGCCACACACCAGGAAGCTGTTAGAGCCCTGCTCTCCAACAAACAGGAGATCCGAATGCTTGTGCGCAGAGATCCCTCGCCCCCCGGCATGCAGGAGATTGTCATTCACAAGCAGCCTGGAGAAAAGCTAGGCATCAGCATCAGGGGCGGAGCTAAAGGCCATGCAGGAAACCCCTTTGACCCCACAGATGAGGGCATCTTCATTTCCAAGGTGAGCTCCAGTGGTGCCGCTGCACGAGACGGCCGACTGCGGGTGGGCATGCGTATTCTTGAGGTGGGCAACAACAGTCTGCTGGGTATGACACACACGGAAGCAGTGAGGGTCTTGCGTGCTTCCGGTGATTCCTTGGTTATGCTTGTGTGTGATGGCTTTGACCCAAGAAACGCTACAGGCATAGAGGCATCCCCTGGTGTTATTGCAAACCCGTTTGCAGCAGGTATTGTTCGTAAGAACAGTATGGAGAGCATCTCATCAGTAGACAGAGACCTGAGTCCTGAAGAGATTGACATCATGCAGAAGGAAGTAGAGATGGTGAGAGAGACATCCCAGTGGGAACGGGAGGAGATGGAAAAAGTGGAGCGTATGCGCTTGGAGCGCGAGGAGGCAACTCGCTTGCTGGAGGAGGAAACTGAGAATTTGAGCACTGGACCCCTGAAACTGGACTACAAGACACTGGCGGCTCTGCCTACAACTAGTCTACAGAAAGTTAACAGATTTTCTCCCTCCTTTGCTGCATTCGTCACAATGGAGGCTGCCATGCCGGCTGGCCCTGTAGATCCCCTGGGTTTTGAGAAAGTCCATGCCTCTATGTACCATGTAGAACCCGTTGCCCTCCCTTCGTCTCCAGTCTGCCCAGCCGCAAGTTCAGCGGCTTTAAAACAGCCCCAAGCCGACACATGGGACCCCCTCCCAGCTCTAGGAGTGCCACAAGAAACTAGCGCGGAAGAAGAATGTCTTGTGGACTCCCAGCCAATCTGCTTTAGTGAAAATCCATTCCTTGTGGCTAATCGCAAGAGCAAAGGCTGCCCTCCTGAGGAGCGCATTTTATCAGGGCCACCTGGTTCATCATCTGAGCCTCACAGGATTGACAGTCCCGTCCGAGATGCTGCCTACTCTCCACACAACTCGCAGTCAAACATTCAGTTTCCTTCACATGCAAACAACAAGGATAATTCATCAACAAAACCTGGTGCCATTCAGCCACTCTCTAGGGTGCGACCCGCTGTGTCTCCAGCCAGTCAGGATGGCCACAGCAGTCCCAACCCTTTCCAGCATGGCCTCTCTCCCATCAGCTCTCAGACCACTTTACCAATGCCTAAAGACCAACAGAACGCGACTGTTGTTTTATTTTCTTCACGTAAATTCCAAGGTGTGATTACCGCTGTGCCTATTAAGCCTAACAAATGGTCACACCATAATCCAGCTGTTCCATCCTTTTTGTCCTCTGTCTGTTTCTCTACCCCTCCACCCCTCCGTCCTCGACTCCCCCAATCCCTCGTACAGCCTCGTGCCCCATCCCCTGACACACATGAGGAATACCCCATCAATATCAAGCAGGTATATAAGGCCTTCGCAGCTGTGCCACACTCCCTGGCCATACTGGAACCCCCACAGGATCTTTACTCTCCACGGAACAATGTCAGCGCAAAGCAACCATCACCAGAGCCTGAGCTGAATAATGAGGTGTTTATGGATGAGGGTGATGGTGAGGGCAATGGTCCTCTCGGCTCTCGCCCCTCCCTCTCATCTGACCGCCGCGAGTACAGGAGCCTGGCAGCCGTGCCACGCTTGTCTCGCCCCTCAATGGAGTCGAAGGCAGTGATTATTGGTGACGAGGCTTCAGGAGAGCAATCATTTGAATCTTTTTGCAATGGCAGCATATTATGTAATCACTGCATCATCATGGTGGTGGAACAGAAGAGATTTGGTACTTTGGTACTTATTATGCAAATTCTTACTCATTACGCAAATTCTTACTCATTGTCTGAATTTCAGATCATCATGGGAGCTGCTCTAGCATGCCGGATGCATACTCCCTCCTCTTTTGGCAGAGATAGTCCAGAGCAGCGCTCCTTTAGGGACAGACAGAAATATTTTGAGATCGATGTGAAGCAGCAGACACCAGACAAACCTAAGCCTCGCATCTCTCTTGTGGGAGAAGATGACCTGAAGAAAATGAAAGAGGAAGAAGCAAAGCGAATTGAACAGAGGGCACAAGAGTATATGCTGGATGAAGACGAGGAGGAGGAGGAAGATCTGGCAAAACAGGTGGCAGATATGAAGGCTCACGGAAAGGTTATACTTGATGGTGTGGAGTACAAGGTGGAGAGCTTGGGAAGTCACAGTTCCCCATCTCCACGGCAGTGTGCCACGCCTCCGAGCTATAGTGCCACACCTCCCAGCCACTGTGGCAGCTCAGGTCCTTCCTCTATCGACGGTAAAGGAGACTCCCAGCGGAATTCAGTGGAAGACAGCTTCAGACTGGAGCAGAGACCCAATTCCATGACGGGTTTGATCCCAGTTTATCCTGGTGAATCTGTGGCTCCCATTCGGACAGCCAAAGCAGAGCGTAGGCATCAAGAACGGTTACGCATGCAGAGCCCAGAGCTTGCCGTCGCTGTGGACAAGGAGCTGTCGCCTGCTGAAAAACGAGCCCTGGAGGCAGAGAAGAGGGCCATGTGGAGAGCAGCTAGGCCTTATGGTCTAGAGGAGGACGTAAGGCAGTATGAGCAAGACCTGGCTAAGCGGCTCTACCAATCCCGTGTGAGGGCGTCACTAGGCAGTGCTGCAGCCCCTCCCACTTCCTGCTCCTCCTCTTCCTGTCAGCCCAGGATGAAGTCTCTAGAGCAGGATGCTTTGAAAGCCCAGATGGTCATTGCCAAGTCTAAAGAGGGGAAGAAGCGTGGAACGTTGGATCAGCTGTCGGAGTCACCGTCACCTGCGCCCACACCCTCCCCAACACCAATGGAAGGTATTGCCTGCATGCAAAGCATCGAGGAGTCCAGCCTGCCCGAACCCTCTGATCCACTCCTGTCCTCCTGGCTTTCCCTGCTTCCCCTGCTCCTTCTCTCCCTGGCCCTTCTGACAACTAGTTCAAAACTATTAACTGTTAAGGCCCTCTACTCGCCAGCATGTAGTGTAGAGGCGGGGCTTACAGATTGGTCCGTGGGCTTTGTGTTGATCCAAAACATGGGATATCATACTAATGCACTAAAACACTTTAAAAGAAAAACACCTTTGCATTGTCCTCTCCCTCCCTCCACTCTGTGTACGGCCCTGCTCACTCACCCTCAGACAGCAGCTAATAACACATGGTCTGATTCCTGCGGTCTGTCTGAAGGACATTTTCTTGATACCAGATTGAGTAAAAGAGCTGAATGTGGCTTTTCCATGTGGGAGAGACAGTTCTACCGGGGATGCAGGTCCCCTGGTGCAGGTGATGATGTGCGCTTCATGGATGATGCCTCCAGTAACCCGGATCCAGAAGTTCCTGTGGCCACCACGTCTGCTCTAGAGGAGATGGCTCTCTACAGTAACAAGCGCAAACTACGACAGGGCCGCCGCAGCCTGGAGGCTCCTGTGCCCACATAACCGTACTCACACACTAATGCATCTGAACTGTGAAGATAAAACACAATAGTGATCATCTAATGCTAAGAGATGTACACAGATA

Function

symbol description
scrib Enables protein heterodimerization activity. Acts upstream of or within several processes, including establishment of mitotic spindle orientation; morphogenesis of an epithelium; and nervous system development. Located in membrane. Is expressed in brain; neural tube; and secondary posterior lateral line primordium. Orthologous to human SCRIB (scribble planar cell polarity protein).

GO:      GO:0016337, GO:0060027, GO:0030154, GO:0001764, GO:0007275, GO:0030054, GO:0005737, GO:0035089, GO:0016020, GO:0001944, GO:0043065, GO:0097475, GO:0060561, GO:0016477, GO:0045930, GO:0008283, GO:0031252, GO:0045211, GO:0005913, GO:0005886, GO:0050918, GO:0001736, GO:0014021, GO:0000132, GO:0042734, GO:0090630, GO:0005515, GO:0046982

KEGG:

id description
K16175 SCRIB; protein scribble

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000026_12486292_12534245.mRNA True 7136 mRNA 0.52 49 12485886 12534327

Neighbor

gene id symbol gene type direction distance location
CI01000026_12425699_12438163 NA coding upstream 47265 12424079 ~ 12438621 (+)
CI01000026_12203244_12209526 SHH, SHHA coding upstream 276188 12201358 ~ 12209698 (+)
CI01000026_12192269_12200366 NA coding upstream 285152 12191652 ~ 12200734 (+)
CI01000026_12094316_12125431 NA coding upstream 359622 12094316 ~ 12126264 (+)
CI01000026_12074163_12076475 MNX1 coding upstream 408346 12073813 ~ 12077540 (+)
CI01000026_12551009_12554565 NA coding downstream 16682 12551009 ~ 12554565 (+)
CI01000026_12558237_12560933 RGS9BP coding downstream 23910 12558237 ~ 12561618 (+)
CI01000026_12562467_12570436 DPH2 coding downstream 28140 12562467 ~ 12570774 (+)
CI01000026_12582462_12589223 GAREM, GAREM1 coding downstream 47977 12582304 ~ 12589557 (+)
CI01000026_12653232_12657339 CHPF2 coding downstream 118745 12653072 ~ 12657836 (+)
G134314 NA non-coding upstream 4416 12456629 ~ 12481470 (+)
G134329 NA non-coding upstream 29424 12451916 ~ 12456462 (+)
G134282 NA non-coding upstream 76150 12409380 ~ 12409736 (+)
G134271 NA non-coding upstream 89596 12395063 ~ 12396290 (+)
G134262 NA non-coding upstream 107193 12378426 ~ 12378693 (+)
G134306 NA non-coding downstream 61469 12595796 ~ 12597699 (+)
G134348 NA non-coding downstream 70273 12604600 ~ 12605365 (+)
G134350 NA non-coding downstream 74939 12609266 ~ 12609676 (+)
G134356 NA non-coding downstream 82628 12616955 ~ 12617540 (+)
G133542 NA other upstream 1008979 11476117 ~ 11477544 (+)
CI01000026_11241496_11246081 NA other upstream 1230813 11241496 ~ 11246204 (+)
CI01000026_11075931_11078249 MDK, MDKA other upstream 1406806 11075784 ~ 11079080 (+)
G133192 NA other upstream 2323925 10159819 ~ 10161961 (+)
G132667 NA other upstream 2916726 9568739 ~ 9569160 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00019057 NA coding CM030124.1 CM030124.1 1783777 ~ 1831277 (+)