CI01000026_12558237_12560933 (RGS9BP)


Basic Information

Item Value
gene id CI01000026_12558237_12560933
gene name RGS9BP
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 12558237 ~ 12561618 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000026_12558237_12560933.mRNA
ATGCCACTGTCCAACAACAAGGTCACTGATGATGGAACTTCAGCACAGCCACTGCAAGAGGGAAAAGCAATGGTGGACTCCCTAATCAAGGTGGTGGCATGTTATCGGCACTTAGCCTCCTGTGTTGGCGGATGCATGGACAACTCCAGCCTACGACGTGATCTTCGGCAAACACGAGAGCGAGCCCAGACACTAGCGCTGTCCTGCCGAAACCACCTGACAGCTCGACTAAGGGATAAAACGTTACCAGAGACTGAAAGGAAGGAAACTGAGCTGCTGTGGGTAGCGTTCTCCTCATGTCTGGAGCTCCTACATGCAGACATGTGCAAGGTTTTCACCATGGTCAAGCACTTTTCCCTGGCCAATAACAGTACCATGGTGCAAACAGGCATACAGGGGGGGACAACAGAGGTGGCGGCACGGGCCTTGAGCCTGCCTGACCTGCAGGAGGCAGGCGACGGTACCCAGACGTCCAGCGTGGAGGGCCAGGAGCAGAGTCAGCTGGAGCAAGAGATCGCACAGGTGGACCGCACACTGGAAGACATGGAGCTGAAAGTCAATGTGCTGCGCTGGACTGTGGAGGCACTGGGTCCTCAGTACGCAGACCCTGTTAGCACTGACAGTGCCTCACTAGCACTGCTGTCCATCGATGAAGAGGCAGCTCAAGGCTTCTGCAGTCGTAGCCAGATGTTTGCGGCTATGATGCTGTGCGGTGTGGCGATCTTTGCAGTGGTGCTATCAGTGTGTGTGGTGCTCCTGGTCTGAAGTCTTAGCACTTGTTTTATGTAGGCTTTTTCTTTTTCATAGGTCTCTTTAGTTGTGATCAGCCAAACATCAACAGTTTGCACAGCACAATATTAAAAATGAAACTGTCTGTGTGTAGTACTTACAATTTGACAGTTCCTTACTGTTGATCTCAACAGAGCCTGTGAGTCCTTTTTTACATATCAAAAAACTTTGCCCTTAATTTTGGGTGTATGATCATTTATAGCAAAAGAAAGCACGGTGAATTAATTTGGGAAATTTGGGCAAGCAGTAAAATCTGATTTTATATGTAATTTCAGGAGGTAGCCTTCTGTTTTGAGAGGTTTTGGTGTGAGTAAACACAAGTCTTGTTTACTGCAGCTCAAGTCCTGGGTGGTTCATTGGCTGGTTCATCATGCCATACCTTCAGAACCTTATTCATCTGTTTTAGTTTTTGACTATAATACAGTATCAACACTGACACAACACCTAATCCTAATCACTAAAAGAAACTGGCTTTAATATGTTATGCACATATCTTTATCTTTGTGTAGAATTTAATTATTGATTTAGTTCTAATCAAATTTCTAGAAACCTGTTACACCAGCCAGAAACAATAGAACTGTTTGTTTTAAAATGTTAGGCAGAGTATGACTGGTAGTACTCAGTCATTAATTATAAACAAGTAGGGGTTAATCAATATAAA

Function

symbol description
rgs9bp Predicted to be involved in G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in neuron projection. Human ortholog(s) of this gene implicated in bradyopsia. Orthologous to human RGS9BP (regulator of G protein signaling 9 binding protein).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000026_12558237_12560933.mRNA True 1450 mRNA 0.45 3 12558237 12561618

Neighbor

gene id symbol gene type direction distance location
CI01000026_12551009_12554565 NA coding upstream 3672 12551009 ~ 12554565 (+)
CI01000026_12486292_12534245 SCRIB coding upstream 23910 12485886 ~ 12534327 (+)
CI01000026_12425699_12438163 NA coding upstream 119616 12424079 ~ 12438621 (+)
CI01000026_12203244_12209526 SHH, SHHA coding upstream 348539 12201358 ~ 12209698 (+)
CI01000026_12192269_12200366 NA coding upstream 357503 12191652 ~ 12200734 (+)
CI01000026_12562467_12570436 DPH2 coding downstream 849 12562467 ~ 12570774 (+)
CI01000026_12582462_12589223 GAREM, GAREM1 coding downstream 20686 12582304 ~ 12589557 (+)
CI01000026_12653232_12657339 CHPF2 coding downstream 91454 12653072 ~ 12657836 (+)
CI01000026_12706512_12707086 NA coding downstream 143675 12705293 ~ 12707152 (+)
CI01000026_12867260_12871481 NA coding downstream 305593 12867211 ~ 12871720 (+)
G134314 NA non-coding upstream 76767 12456629 ~ 12481470 (+)
G134329 NA non-coding upstream 101775 12451916 ~ 12456462 (+)
G134282 NA non-coding upstream 148501 12409380 ~ 12409736 (+)
G134271 NA non-coding upstream 161947 12395063 ~ 12396290 (+)
G134306 NA non-coding downstream 34178 12595796 ~ 12597699 (+)
G134348 NA non-coding downstream 42982 12604600 ~ 12605365 (+)
G134350 NA non-coding downstream 47648 12609266 ~ 12609676 (+)
G134356 NA non-coding downstream 55337 12616955 ~ 12617540 (+)
G134357 NA non-coding downstream 57823 12619441 ~ 12621548 (+)
G133542 NA other upstream 1081330 11476117 ~ 11477544 (+)
CI01000026_11241496_11246081 NA other upstream 1303164 11241496 ~ 11246204 (+)
CI01000026_11075931_11078249 MDK, MDKA other upstream 1479157 11075784 ~ 11079080 (+)
G133192 NA other upstream 2396276 10159819 ~ 10161961 (+)
G132667 NA other upstream 2989077 9568739 ~ 9569160 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_033970 rgs9bp coding NC_007118.7 CM002891.2 41303572 ~ 41312197 (+)