CI01000026_12929788_12932668 (HRH3)


Basic Information

Item Value
gene id CI01000026_12929788_12932668
gene name HRH3
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 12929639 ~ 12933391 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000026_12929788_12932668.mRNA
GTATAAAAACCTGTGACAGCCCGCGCAGCTCGCCGAACTAAGAATGAGTAGCACACAGCCACTGTCGGGCGCGCGGATGGCGCGGCAGCTTTTACGCGCTGACTGTCATGCATAATTGCTTGTTGACCAAGGAAAGCGGCGGCAACACCATGCAGTCCTCTTTATTGTCCGTGGCTCACTCTCCCGGGATACCTACGGCTGTTTCATTCATTTGGAAATCAGGAAATCCGCAGTCGTCCAACTGGACGGGGCTGGAGAGAGAAAACGCGTCTAGTGTCGGCGACTTGAACACATTTGATAACCGGCGCGCACAGTATGGCCAGTTCACTCCAACCACCTCAATATTTCTGACTGTTCTCATGACACTGCTGGTGTTTGCCACGGTTCTCGGGAACGCGCTTGTCATCTTAGCTTTTGTAGTTGAGAAAAGTTTACGCACACAAGGCAACTTTTTCTTTTTAAATTTGGCCATAGCGGACTTTCTTGTCGGCGGGTTTTGCATCCCCGTGTATATCCCCTATGTCCTGACGGGTGAGTGGAGGCTGGGCAGAGGGCTGTGTAAACTGTGGCTGGTAGTGGATTATATGCTATGCACCGCCTCAGTCTTCAACATCGTGCTCATCAGTTTCGACAGGTTTCAGTCCGTCACTAAAGCGGTGAGTTACCGTTGCCAGAAGGGGATCACCAGAGAGGCTGTTTTGAAGATGCTCTGCGTGTGGCTGGCAGCATTCCTTCTTTATGGTCCAGCTATTATCAGTTGGGAACACATCGTAGGAGGAAGTGTAGTGCCAGATGGAGAGTGCTATGCTGAATTTTACTTCAACTGGTATTTTCTGATGACTGCCTCAACTGTCGAGTTCTTCACACCTTTCATAAGTGTCACTTATTTCAACCTCAGCATTTACATCAACATCCGCAACAGATGCGCAGTGAGAGAAGAACAGCCGACTTACATTCGGCTTAGGAGCTTCAAGATGAGGCCGCTCAGAGCCGGCGATGTACAGCGTGTGTTTTTTGTGAGGCCCATAGAGGAAAGAGGGGTCGTGAATTTGTCCTCGAGGTCACGATGCTGTAGATTAGCTTCTACTGCAAAGGTGTCCACCGCCGAGTTTGGCAATGGCAGACAGACTAAACGAAGAGACAGCACCATTGCAGATTTGCCTCCTCTGCAGGTCGGAGAGCGGCTCCTGCCATCCAGTGAGGCACAGTTTCATTACGTAGATCATTCGGGTGGATCACACAGACACCGTCCTGATACGGTTGCCAGTCTAGCCAGCCGTTTCCGCTTATCTAGAGATAAAAAGGTGGCAAAGTCTCTAGCTGTAATAGTTTGTGTTTTTGGACTCTGTTGGGCACCCTACACGCTGTTGATGATCATTCGGGCAGCATGTCACGGTCAGTGCGTCCAACACTACCTTTATGAGATCTCGTTCTGGCTGCTGTGGATAAACTCATCCATCAATCCAATCCTGTATCCTCTCTGCCACAGCAGCTTTAAAAGAGCCTTCAGCAAATTACTGTGTCCGAGCAAAACAAAAATACAACCTCAGAACATTGACCAGAAGTATTAAATTTATGAGGATGACCACATATCCAAATGGGCTCCCCCCCCCCCAGTTTAATGTGCTTGTATCTAGCAGTACTGAACAGTAGCACAACATTTTCTTTGTCTACATTGTTATTGAAAAGACAAAGACCTTTTATCCACTTATTCAAATTCACATTTTTGTATGAAATCGTGGCATAGCCATATTTCCTCCAAATTCAATGATGTATTATTTATTTATGTACAAATGTGTCTAGCGCAGTGCCATGTTTGCCTTTGTAAGTAATTTTATAAAAAAAAAAAAAAAATGTTTTCAAAATAAACCATACTGGTGATGTTATGAACATAATGGACTAATATACCTTTTGAAACCACAGTCTACAATGAGAACAACTGAGGTGATATAGAGCAGACTGTCCGTGATAATTGTATACTGATTCTACATGACAGATGTACAGGGATTGCTGGCAAAGCCTGTAGTTCCCCTAGCAACTGCGGGACGGACTAAATACAGAGAAACGCAACTCATTTCTAATAATTATATCAAGGTAACCAATTTATTATGGATTATTTCAGGGCTTATAGCAAAGTCTGAACACTTGTATCTAATCAACGCTTGAGATTCTGTTTAAACTGTCAGATACAGAAAACCTATAGACTATTAATACTATTAAGACTTGTATATATTAAATCATAACCAATACCTGTACCAACATTCACTTCAAAATCTGGCTTCAAGGTATGCTTA

Function

symbol description
hrh3 Enables histamine receptor activity. Predicted to be involved in adenylate cyclase-activating adrenergic receptor signaling pathway. Predicted to act upstream of or within G protein-coupled receptor signaling pathway and regulation of neurotransmitter levels. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in brain; heart; and spleen. Orthologous to human HRH3 (histamine receptor H3).

GO:

id name namespace
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K04151 HRH3; histamine receptor H3

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000026_12929788_12932668.mRNA True 2294 mRNA 0.45 3 12929639 12933391

Neighbor

gene id symbol gene type direction distance location
CI01000026_12867260_12871481 NA coding upstream 57919 12867211 ~ 12871720 (+)
CI01000026_12706512_12707086 NA coding upstream 222487 12705293 ~ 12707152 (+)
CI01000026_12653232_12657339 CHPF2 coding upstream 271803 12653072 ~ 12657836 (+)
CI01000026_12582462_12589223 GAREM, GAREM1 coding upstream 340082 12582304 ~ 12589557 (+)
CI01000026_12562467_12570436 DPH2 coding upstream 358865 12562467 ~ 12570774 (+)
CI01000026_12966022_12977066 ORC6 coding downstream 32205 12965596 ~ 12977588 (+)
CI01000026_13019100_13028307 GPT2 coding downstream 84729 13018120 ~ 13029368 (+)
CI01000026_13218786_13290069 PHKB coding downstream 285395 13218786 ~ 13290154 (+)
CI01000026_13318769_13335447 NA coding downstream 384692 13318083 ~ 13336525 (+)
CI01000026_13356327_13411385 ADAMTS18 coding downstream 422936 13356327 ~ 13411734 (+)
G134694 NA non-coding upstream 46330 12881258 ~ 12883309 (+)
G134699 NA non-coding upstream 79859 12849287 ~ 12849780 (+)
G134691 NA non-coding upstream 118926 12803819 ~ 12810713 (+)
G134689 NA non-coding upstream 128032 12789703 ~ 12801607 (+)
G134688 NA non-coding upstream 140015 12789210 ~ 12789624 (+)
G134753 NA non-coding downstream 51456 12984847 ~ 12997454 (+)
G134759 NA non-coding downstream 71374 13004765 ~ 13004965 (+)
G134761 NA non-coding downstream 72051 13005442 ~ 13005669 (+)
G134762 NA non-coding downstream 72581 13005972 ~ 13006174 (+)
G134701 NA non-coding downstream 99404 13032795 ~ 13033881 (+)
G133542 NA other upstream 1452732 11476117 ~ 11477544 (+)
CI01000026_11241496_11246081 NA other upstream 1674566 11241496 ~ 11246204 (+)
CI01000026_11075931_11078249 MDK, MDKA other upstream 1850559 11075784 ~ 11079080 (+)
G133192 NA other upstream 2767678 10159819 ~ 10161961 (+)
G132667 NA other upstream 3360479 9568739 ~ 9569160 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_033977 hrh3 coding NC_007118.7 CM002891.2 41748693 ~ 41753237 (+)