CI01000026_12966022_12977066 (ORC6)


Basic Information

Item Value
gene id CI01000026_12966022_12977066
gene name ORC6
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 12965596 ~ 12977588 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000026_12966022_12977066.mRNA
ATATAAAACAACAACAACAAAAAACAGCTACACATAAACGTATCTTAGAGCACAATAAATAAAAAATGCTTATATAAACATAACTGTAATGAAGTAACAAGGCTAATGCTAGCATGATTAGCAGTTCAAATTAGCTCATTTTGTACATAACCTGTGGACTGTAATGACAACAAAACATAATAGCTGCAAGTTTACTAAACCTGCAGGCCGAATATTAAATCGCTTGTAGAATAAAACAAGAGAGAGGAAATAAATGAGAATAATTAGGTGTTTGTAGGCCTCCGCATCTCAAACGCTAATGCTAACGGCTATCTTCACAGACGCAAAACAGCCAATCAAGAGATCTCAGTGTCCCTCTGACACTACCACCGCTATACACAACTTAACGGCGCATATAAAACATCCAGAATGCAGTCTATACATACGATGATCCTAATATCTTACCATGATTATCAGGAGTATGCCATCAAACTATCTGGACTGAGTCCTAAGGTTTACTCCAGCAATTTGAAGGCTATGGAGTGCATGCTGGGCCTGCAGTCAAACCTGGGTCTCAGAGATCTTGCAGTGCAGTATGGGTGTTTGGAAGCAGTTAAAGTGGCCTCTCAGATCCTTCAACGGTATGAGACCAGTTTGCCCGCTGCTCAGCAACAAGACCTTGACCTGTCTAAACCTCTCTTTACCACAGCAGCTCTATATGCAGCATGCAAGTGCATGAAAATCAGAACTGACAGGAAATTAGCCTCTTCATCTGGAGCAAAGAAGGGCATCTTTGACCGGCTATGCACACAGTTTCAGAAATTTGGACAGGAGATCAGCAATGAGGCTTCATCTTTGGAGAAACCAGTCAAAACTGCTCAAAAGAGGCAGAAGACTCTCACTGAAATGCTAGAAACGGAAGAAGATGATGGGAAGCCTGCAACATCTCCTAAGCAAGAGCGAGTTGAAAAGACAGAGGAGGAAGAGACACAACATTATGAGGAGTGGAAAAGAAAAATCCTTGAAAATGCATTAAAAGCGAAGGCTGTAGATTCTTGAACTCTGTAAGGTTTTAAGTTTCCAATTTATTTAATTATGGTTCTGCATAATTTCAGCTTTGAGTTGGATTTAATATTCTACCAAGAGAAGTTCCCTGCCCCCCTCTGGCTTCTTGTGTGAAATTGTTTCGTCCTTATACAGACATTTCCAGAGGAATTGAGGCACTCTCGTTTTTTTTTATTGCCATTTGCCAGGTCAAAGACTATTACTATTTTAGATATTGTGCAAAGATTTACCAACTGTTAAGTTCCTCATTTAGATAATGTATTGAAAACGACAAGATTTGTCATTCATTCATTTAGTTTGAGTGATAATGTTTGAATATGTTTTTAGTCCATCATGGTTTGGATGATTGTATATGGTGACAATATGACTTAATTTCTCAGTTTTCTGTGTTATTCCTTTGAATCACATTAAAATCTCATAAGAGGTGTATAATGCATTCAAGATCATCTAGATGTGTTTTATCAATTTGTTTCAATAATACATGGCTCATCTGCTTCCAGTTTGATTTTAATGTAA

Function

symbol description
orc6 Predicted to enable DNA binding activity. Acts upstream of or within cilium assembly. Predicted to be located in nucleus. Predicted to be part of nuclear origin of replication recognition complex. Is expressed in central nervous system; eye; intermediate cell mass of mesoderm; and pharyngeal arch. Human ortholog(s) of this gene implicated in Meier-Gorlin syndrome 3. Orthologous to human ORC6 (origin recognition complex subunit 6).

GO:

id name namespace
GO:0003688 DNA replication origin binding molecular_function

KEGG:

id description
K02608 ORC6; origin recognition complex subunit 6

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000026_12966022_12977066.mRNA True 1560 mRNA 0.38 6 12965596 12977588

Neighbor

gene id symbol gene type direction distance location
CI01000026_12929788_12932668 HRH3 coding upstream 32205 12929639 ~ 12933391 (+)
CI01000026_12867260_12871481 NA coding upstream 93876 12867211 ~ 12871720 (+)
CI01000026_12706512_12707086 NA coding upstream 258444 12705293 ~ 12707152 (+)
CI01000026_12653232_12657339 CHPF2 coding upstream 307760 12653072 ~ 12657836 (+)
CI01000026_12582462_12589223 GAREM, GAREM1 coding upstream 376039 12582304 ~ 12589557 (+)
CI01000026_13019100_13028307 GPT2 coding downstream 40532 13018120 ~ 13029368 (+)
CI01000026_13218786_13290069 PHKB coding downstream 241198 13218786 ~ 13290154 (+)
CI01000026_13318769_13335447 NA coding downstream 340495 13318083 ~ 13336525 (+)
CI01000026_13356327_13411385 ADAMTS18 coding downstream 378739 13356327 ~ 13411734 (+)
CI01000026_13705684_13706187 NA coding downstream 727396 13704984 ~ 13706562 (+)
G134702 NA non-coding upstream 20911 12850847 ~ 12944685 (+)
G134694 NA non-coding upstream 82287 12881258 ~ 12883309 (+)
G134699 NA non-coding upstream 115816 12849287 ~ 12849780 (+)
G134691 NA non-coding upstream 154883 12803819 ~ 12810713 (+)
G134689 NA non-coding upstream 163989 12789703 ~ 12801607 (+)
G134753 NA non-coding downstream 7259 12984847 ~ 12997454 (+)
G134759 NA non-coding downstream 27177 13004765 ~ 13004965 (+)
G134761 NA non-coding downstream 27854 13005442 ~ 13005669 (+)
G134762 NA non-coding downstream 28384 13005972 ~ 13006174 (+)
G134701 NA non-coding downstream 55207 13032795 ~ 13033881 (+)
G133542 NA other upstream 1488689 11476117 ~ 11477544 (+)
CI01000026_11241496_11246081 NA other upstream 1710523 11241496 ~ 11246204 (+)
CI01000026_11075931_11078249 MDK, MDKA other upstream 1886516 11075784 ~ 11079080 (+)
G133192 NA other upstream 2803635 10159819 ~ 10161961 (+)
G132667 NA other upstream 3396436 9568739 ~ 9569160 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location