CI01000026_13218786_13290069 (PHKB)


Basic Information

Item Value
gene id CI01000026_13218786_13290069
gene name PHKB
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 13218786 ~ 13290154 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000026_13218786_13290069.mRNA
TGAAGAACACCATTCTGAATTATCAGAGCCCTACCACTGGTCTGTTCCCAGTGAAGACCTGTTCCACCTGTAAGGAGGCTAAAGTCAGAGACTCCCTCTACTGCGCTGCCAGTATCTGGGCACTGGCATTGGCATACAGGCGCATCGACGATGACATGGGCCGCACTCATGAACTGGAGCACTCTGCCATCAAGTGCATGAGGGGGATTATGTACTGCTACATGCGGCAGTCTGATAAGGGTTTTGACAACATTCCCAGGGCGAGCTGCCTAGAGTGGCTGTGGTCATTTGCTGAGTTGTTGGGACTTCCTGTTTTGGTCCAGCTGGTGGAGAAATTTAAGCAAGACCCGAGTCCGTCCACATGCCTGCACTCAATATTTAATGTGCAGACTGGAGATGAGGTTTACCAGTATGAAGAGTACAGCCATCTACAGATTGATGCCGTGTCTCTATTTCTATTGTACCTGGTTGAAATGATTTGTTCTGGCCTTCAAATAATCTACAATACAGATGAGGTATCATTCATCCAGAATCTGGTGTTCTGTGTGGAGAGGGCGTATCGTGTGCCAGACTTTGGCATGTGGGAACGGGGAAACAAATATAACAATGGAAGCACAGAGCTGCACTCCAGCTCAGTGGGACTAGCCAAAGCAGCTCTGGAAGCCATCAATGGATTCAACCTGTTTGGAAATCAGGGATGCTCCTGGTCAGTCATTTTTGTGGATCTGGATGCTCATAATAGGAACAGACAGACTCTGTGCTCTCTCTTGCCGAGGGAGTCTCGTTCCCATAACACCGATTCGGCCCTCCTGCCCTGCATCAGCTACCCGGCGTTCGCCGTGGATGATGATGCTTTATATTCCCAGACTCTGGACAAGATTGTCCGCAAGCTGAAGGGCAAGTACGGCTTCAAGCGCTTCTTACGGGACGGCTACAGAACGACCAATGAAGACAAGAACCGCAGGCACTACAAACCTGCTGAGATGAAGCTCTTTGATGGGATTGAGTGCGAGTTTCCCATTTTTTTCATCTATATGATGATTGACGGTGTGTTTAGGGAAAATCCTGCTCAAGTCAAAGAGTACCAGGAACTGCTAGATGCTGTCATCTTCCAGTCCTCTGAGGACGTGTCTCAGTCAAGTGCACAACAGTGGAGATGCTCATTATTTAAACAGACCAGAACACCGTCGATTCCCCACAGGCAGACAAAAAGCAGCTCTCATGCTGTCTTCAGACCACCGCTCTTCAGAAGGCACGCCGTTATTCCCAAGTATTACTATGTGCCAGCAGACTTTGTAGAGGCTGAACAGAAGAAACATGGCAGCCAGAAGCGCTTCCCCAGCAACTCTGGGCGTGATGGGATGCTGTTCCTCTGGGGACAGGCCCTCTATAACATCGCTAAGCTGCTGGTGGATGGTTTGATCAGCCCAAAGGACATCGACCCCATCCATCGCTATGTGCCACGACAGGATCAGAGGAACGTCAGCATGCGATACTCCAATCAGAGATTAGACAGGCCTTTTTTCCTGATTGATGGATGTACCCTGTTTCAACAAAGCACAGATGGAGCTCAGTTTAAATTTAGAAACGATTGTTCAGCAGAGCAGCCAAGAGGCTTAAAAACACAGTCCCATTCTGTTTCTGAAACCGCTCTGCACAGACTTTCCTTTGGAGCAGCTCTACAGGGTCCCATTGTGAACGATGTGGTCATTCATGTGGCCCTGGTAGCAGAAAGTCAAAGATTGCAGGTCTTCCTCAACACCTATGGCATTCAAACTCAGACCCCACAGCAGGTGGAGCCCATTCAGATCTGGCCTCAGAAAGAGCTGGTGAAGGCATACCGCTTCCTTGCCATCAATAAGAAGCTCGGTTTGAGTGGGAGACCGGAGAGGCCTGTTGGCTGCATTGGCACTTGCAAGATTTATCGAATCCTTGGAAAGACTGTGGTTTGCTATCCAATTGTCTTCGATCTCAGCGACTTCTACTTGTCCCAGGATGTCATGCTTTTGATAGATGATATTAAGAATGCCTTGCAGTTTATTAAGCAGTGCTGGAAGATGCCAGGCCGGCCTCTTTTCCTGGTCCTTATCAGAGAGGACAACATTAAGGGGAGCCGCTTCAACCCTATCCTGGACATGCTGGCATCTTTTAAGAAAGGAAACATTGGAGGAGTCAAAGTTCATGTGGACAGACTTCAGACCCTGATATCAGGCGCTGTGGTGGAGCAATTGGATTTCCTACGTGTCAATGAAGCTGAGATCCCAGAGTTCAAGAGCTTTGAGGAACTGGAGTTGCCCAAGCACTCGAAGGTGAAGCGTCAAACCAGCACGCCGAACGCCTCTGACCTGGAGCAGCAGCCCGAGATCAACGTCGAGGAATGGTTGCATAAATCCACATTTGAGATTCTACAGAAATTCCATGACTGTGACTGTCTGGCCAGTCAAGCCCAACTGGCCAGTATTCTCCTCAAAAAAGAAGGCCCAGACTTCTTTGATAAAAACGAGAATCTTAAGGATGACTTGGAGAGAATCTACAGAAGAGCTGGGAGCAGGAAGCTTTGGTCCGTTGTGCGCCTTGCTGCCAGTCTCTTAACTAAACTAGTGGACAGCCTTGCACCGAGCATTACTAGTGTTTTAGTGCATGGCAAGCAGGTCACTCTCGGGCTGTTTGGGCATGAGGAGATCGTGATCTCTAACCCGCTGTCTCCAGGGGTCATTAAGGACATCATATACAGCAAGTGCAGCCCCCACGGTGAGCGAGAGGCCGTGCTGCAGCAGGAGCTCGTCATCCACATTGGCTGGATCATCTCCAACAACCCAGAGCTGTTCAGTGGCATGCTGAAGATCCGTGTGGGATGGATTGTTCAAGCTATGAAACATGAGTTGAAGATTCGTGCTGGAGAAATGCCACCTCAGGACATCTACCAGATGTCCCCTAGTGATGTCAAACAGCTCCTGCTGGATGTCCTCCAGCCTCAGCAGACTGGCAGATCGTGGCTTAATAGACGTCAGATAGATGGCTCCCTCAACCGCACCCCTCTCGGCTTCTATGACCGTGTTTGGCAAATCCTGGAGAGAACACGTAATGGCATCATGGTTGGAGGAAAACATCTCCCTCAGCAACCTACTCTGTCAGATATGACTATGTATGAAATGAATTTTTCTCTGTTGGTGGAGGACACATTAAAGAACATCGTTTTGGCTGAGTACAGGCAGATAATTGTGGAGCTGTTGATGGTGGTGTCAATTGTGCTGGAAAGAAACCCGGAGCTGGAGTTTCAGGAGCCGGTGGATTTGGACCGGTTGGTTAAGGAGGCCTTTGCTGACTTTCAGAAAGACCGCAGCAGACTGGAGGGCTCTGAGAAACAGGATAACATGGAGGCCTTCTACAACACACCAACCATGGGGAAACAAAGCACATCCAGTTACATGACCAAGGCAGTAATGATCCAGCTGCTGCAGGGAGAGGTGAAGCCCAGTAAAGATGACCCGTGTTCTGTCAGCTAAAGCACCACACACTCCTGTCTTGCTAACATAGGATTGTTTTTGTTTGTTTTTTGTCTGGAAAATATGATATAGCATATAAATTAAA

Function

symbol description
phkb Predicted to enable calmodulin binding activity. Predicted to act upstream of or within glycogen metabolic process. Predicted to be located in plasma membrane. Predicted to be part of phosphorylase kinase complex. Human ortholog(s) of this gene implicated in glycogen storage disease IXb. Orthologous to human PHKB (phosphorylase kinase regulatory subunit beta).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000026_13218786_13290069.mRNA True 3591 mRNA 0.49 33 13218786 13290154

Neighbor

gene id symbol gene type direction distance location
CI01000026_13019100_13028307 GPT2 coding upstream 189418 13018120 ~ 13029368 (+)
CI01000026_12966022_12977066 ORC6 coding upstream 241198 12965596 ~ 12977588 (+)
CI01000026_12929788_12932668 HRH3 coding upstream 285395 12929639 ~ 12933391 (+)
CI01000026_12867260_12871481 NA coding upstream 347066 12867211 ~ 12871720 (+)
CI01000026_12706512_12707086 NA coding upstream 511634 12705293 ~ 12707152 (+)
CI01000026_13318769_13335447 NA coding downstream 27929 13318083 ~ 13336525 (+)
CI01000026_13356327_13411385 ADAMTS18 coding downstream 66173 13356327 ~ 13411734 (+)
CI01000026_13705684_13706187 NA coding downstream 414830 13704984 ~ 13706562 (+)
CI01000026_13837986_13903960 NA coding downstream 547585 13837739 ~ 13904262 (+)
CI01000026_14074647_14076746 NA coding downstream 784256 14074410 ~ 14077101 (+)
G134772 NA non-coding upstream 101794 13057320 ~ 13116992 (+)
G134701 NA non-coding upstream 184905 13032795 ~ 13033881 (+)
G134762 NA non-coding upstream 212612 13005972 ~ 13006174 (+)
G134761 NA non-coding upstream 213117 13005442 ~ 13005669 (+)
G134759 NA non-coding upstream 213821 13004765 ~ 13004965 (+)
G134871 NA non-coding downstream 14178 13304332 ~ 13304723 (+)
G134880 NA non-coding downstream 35048 13325202 ~ 13325403 (+)
G134870 NA non-coding downstream 125047 13415201 ~ 13417287 (+)
G135248 NA non-coding downstream 368665 13658819 ~ 13659120 (+)
G135256 NA non-coding downstream 376813 13666967 ~ 13667212 (+)
G133542 NA other upstream 1741879 11476117 ~ 11477544 (+)
CI01000026_11241496_11246081 NA other upstream 1963713 11241496 ~ 11246204 (+)
CI01000026_11075931_11078249 MDK, MDKA other upstream 2139706 11075784 ~ 11079080 (+)
G133192 NA other upstream 3056825 10159819 ~ 10161961 (+)
G132667 NA other upstream 3649626 9568739 ~ 9569160 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00020459 phkb coding CM030127.1 CM030127.1 20501491 ~ 20526222 (+)