G132916


Basic Information

Item Value
gene id G132916
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 9849234 ~ 9849703 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU151142
ATTTTAACTCTGAAACAATGTAGTTCCTGATGGAGGGTAAATAAACTCTCGCTTGCTTGGATCAAAGAAGAAGGCATCAACTGTGTTTGGGTGTCTGCAAGACATTGATGCCCATGTGAAAAATGACAATTCTTGGATTTTTTTCTCAGTATATAACTTATCTGTATTGTTTATTGAAAAAGAATGGTCATTCACTGTAGCATAAGCTTATATATATTTATATAGCTTTAGATCAGTAAATATGTCACCAAACTGTGTAATCTCTGTAGGCAGATTAGCTCAGTGTACATGTCTAGTGAAGCAGTATCAAAATAACTCATAGTAATCACTCACAGAACAAAGACTGGCATTGTGCTACTGTGAAGAGAAGGCAGTTCACATACTTCCTGTTACTGACGGCCTTGGCATGACCAATATTTACAGAAATGTTATGGGTTAGACAGCACACAATTAAACTTGTCATAACACAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU151142 True 470 lncRNA 0.36 1 9849234 9849703

Neighbor

gene id symbol gene type direction distance location
CI01000026_09666763_09669325 NA coding upstream 179532 9666680 ~ 9669702 (+)
CI01000026_09602263_09635635 TOX3 coding upstream 212240 9601643 ~ 9636994 (+)
CI01000026_09365911_09428712 CHD9 coding upstream 420158 9364907 ~ 9429076 (+)
CI01000026_09339450_09352303 AKTIP coding upstream 496057 9339450 ~ 9353177 (+)
CI01000026_09175446_09178464 NA coding upstream 670746 9175249 ~ 9178488 (+)
CI01000026_09900193_09906874 SALL1A, SALL1 coding downstream 50490 9900193 ~ 9907237 (+)
CI01000026_09915483_09917692 NA coding downstream 65742 9915445 ~ 9917919 (+)
CI01000026_10124232_10124468 NA coding downstream 274213 10123916 ~ 10125835 (+)
CI01000026_10136110_10149386 BRD7 coding downstream 286293 10135996 ~ 10149466 (+)
CI01000026_10200749_10202405 NA coding downstream 348890 10198593 ~ 10202514 (+)
G132908 NA non-coding upstream 9970 9839015 ~ 9839264 (+)
G132888 NA non-coding upstream 31269 9817686 ~ 9817965 (+)
G132879 NA non-coding upstream 45634 9803342 ~ 9803600 (+)
G132868 NA non-coding upstream 61156 9787856 ~ 9788078 (+)
G132867 NA non-coding upstream 61664 9787332 ~ 9787570 (+)
G132800 NA non-coding downstream 69683 9919386 ~ 9920088 (+)
G132953 NA non-coding downstream 80782 9930485 ~ 9930713 (+)
G132951 NA non-coding downstream 128770 9978473 ~ 9979099 (+)
G132950 NA non-coding downstream 133324 9983027 ~ 9983920 (+)
G132949 NA non-coding downstream 138436 9988139 ~ 9988663 (+)
G132667 NA other upstream 280074 9568739 ~ 9569160 (+)
G131077 NA other upstream 1342447 8501408 ~ 8506787 (+)
CI01000026_08297901_08307596 CTRB1 other upstream 1549820 8297857 ~ 8307629 (+)
G130967 NA other upstream 1660161 8188374 ~ 8189073 (+)
G130552 NA other upstream 2752582 7095053 ~ 7096652 (+)
G133192 NA other downstream 310116 10159819 ~ 10161961 (+)
CI01000026_11075931_11078249 MDK, MDKA other downstream 1221065 11075784 ~ 11079080 (+)
CI01000026_11241496_11246081 NA other downstream 1395230 11241496 ~ 11246204 (+)
G133542 NA other downstream 1626414 11476117 ~ 11477544 (+)

Expression


Co-expression Network