Gene
RNA
| Item | Value |
|---|---|
| gene id | G133192 |
| gene name | NA |
| gene type | unknown |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000026 |
| NCBI id | null |
| chromosome length | 17172400 |
| location | 10159819 ~ 10161961 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU151441 | True | 1520 | TUCP | 0.40 | 3 | 10159819 | 10161961 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000026_10136110_10149386 | BRD7 | coding | upstream | 10353 | 10135996 ~ 10149466 (+) |
| CI01000026_10124232_10124468 | NA | coding | upstream | 33984 | 10123916 ~ 10125835 (+) |
| CI01000026_09915483_09917692 | NA | coding | upstream | 241900 | 9915445 ~ 9917919 (+) |
| CI01000026_09900193_09906874 | SALL1A, SALL1 | coding | upstream | 252582 | 9900193 ~ 9907237 (+) |
| CI01000026_09666763_09669325 | NA | coding | upstream | 490117 | 9666680 ~ 9669702 (+) |
| CI01000026_10200749_10202405 | NA | coding | downstream | 36632 | 10198593 ~ 10202514 (+) |
| CI01000026_10265012_10268157 | NA | coding | downstream | 102984 | 10264945 ~ 10268548 (+) |
| CI01000026_10315650_10317985 | NA | coding | downstream | 153118 | 10315079 ~ 10317990 (+) |
| CI01000026_10351923_10354175 | CEBPG | coding | downstream | 189442 | 10351403 ~ 10356695 (+) |
| CI01000026_10453245_10454111 | NA | coding | downstream | 291164 | 10453125 ~ 10454176 (+) |
| G133188 | NA | non-coding | upstream | 7618 | 10102019 ~ 10152201 (+) |
| G133153 | NA | non-coding | upstream | 90946 | 10068576 ~ 10068873 (+) |
| G132977 | NA | non-coding | upstream | 129308 | 10030239 ~ 10030511 (+) |
| G132974 | NA | non-coding | upstream | 137542 | 10022076 ~ 10022277 (+) |
| G132949 | NA | non-coding | upstream | 171156 | 9988139 ~ 9988663 (+) |
| G133281 | NA | non-coding | downstream | 108106 | 10270067 ~ 10270293 (+) |
| G133285 | NA | non-coding | downstream | 115604 | 10277565 ~ 10277783 (+) |
| G133286 | NA | non-coding | downstream | 117762 | 10279723 ~ 10279929 (+) |
| G133303 | NA | non-coding | downstream | 137215 | 10299176 ~ 10299384 (+) |
| G133310 | NA | non-coding | downstream | 144429 | 10306390 ~ 10306607 (+) |
| G132667 | NA | other | upstream | 590659 | 9568739 ~ 9569160 (+) |
| G131077 | NA | other | upstream | 1653032 | 8501408 ~ 8506787 (+) |
| CI01000026_08297901_08307596 | CTRB1 | other | upstream | 1860405 | 8297857 ~ 8307629 (+) |
| G130967 | NA | other | upstream | 1970746 | 8188374 ~ 8189073 (+) |
| G130552 | NA | other | upstream | 3063167 | 7095053 ~ 7096652 (+) |
| CI01000026_11075931_11078249 | MDK, MDKA | other | downstream | 908807 | 11075784 ~ 11079080 (+) |
| CI01000026_11241496_11246081 | NA | other | downstream | 1082972 | 11241496 ~ 11246204 (+) |
| G133542 | NA | other | downstream | 1314156 | 11476117 ~ 11477544 (+) |
