G134182


Basic Information

Item Value
gene id G134182
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 12326934 ~ 12329825 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU152598
AACAATGTCACATTTAAAACATTTATTAAAACAAGAGTCAGGCTCAGGAAACATTCAAATACACAAAAATACATCATGTCTGCATTAAATGGCAATATGGCACTACATGCAGTGCAGAATCTGTTGTACCATATTTCATCTGAAGATCAAATGGTTTGAAATAACACAGCTCATTAACATTCACTACCTTAAAAACTCTGTTTGGATGCAGTCTGACTGTAAAAGCATAGTAATGGTCATCAAAACATACAGTTTCCATCAGTGTTCCACACAACAGCACATTTTCATCTTTCACAGCAATAGTCTTGATCTTACAAAACACTGGCATCTCACATGCTACTTCTGTACAGATAATAAAGTCAGGGCGATACTCTGTGCCATGGTGTTTGAGCCACTTTACAGAATAGACAACATCTGACATTACCACTCCTAATTTGGAAGCAATTTCTTGGCCACCTTTAAGTTCACCGAATTCTACCATCTTCCCTGGGCCAAAAGACAATCTGTACTGGCTAAAAGACTCCCAGTGCATCGAAGTACAAAATTGGTGCTTTTTGGCTAGTGTTTTGGTGATGTTTTTGAAACTTTTTAATTGTGTTTTAAAAAATTTATGTTTAGCTTCATAACGCATACACCACATGTGCAGAATTGGTCCAATTTTTCTTATACACTGTGGGTAATGGATCATTATATGATGCTTTGGCAAAAGACTTCTTTCAGGAAACAAGTTTTTGAATAGCTGGTGATGTTCAATTATTAAATGTTTAAGATAAATGGTCACAGTGCAAAGCATGCATCTCAGCTGTTCTTAATACAACCTCAGGGCTGTCTTCACAGAACACCGACTGAAAATGATGTTTCTCAAGAAGACAGAAACGACAGCTATATCGAGCCCCAAATGACTCAAGAAACCCAAACAAGCTGTGCAAGCCAAGATTATCCCCAGTGACTTGAATAACTGTACCCCTAATACAACTTCCAGACACTGGATTCTTAACCCCTTCAATCTCAAGTACTTTCAAGTCATTTACTAGAGGCTCAAGTATAGAATTAAAACCATAGCGCCTAATATCCTGTGCATGAAAGAGAGCACATAAATGAATATTCACCAATGAGGAGTTAAAAACTGGGGGGAAATTCCTTAATGTAAAATAGATTGCACCTAATTTGTGTGTACCTTTTTTGGATCCCAAAGGATTAGCGGTCTCAAAATCGTCGTAAAATAACTGAATTTGTAAGGCATCATTTTCTGTATAAAATAGGGGATTACTTTTAAAATATGCCACATCACTTAAGTCAACATAAATGACTTCCTTTGGAAACTGCCTGGGTTTAAACAAATCAATAAGTAGCGGATTTTGTAAAATTGCCTTTAGTGTTTCTTAAATGGGAATATAAGCAAATTTATCAGTTACAACAACTTGATCAAACAAACCTGTGGTTTTATTTCTCCTGCTGTCAAATCTTGTGCCAAGCACTATTTCGCTTGGTTCAACAATTCCCCATTTTTCCGTAAAGAGTCTCTTTCGTTTGGCTTCAGAATTTAACATAGTAAATGGATTTTCCAAGTTTTGAAATGAATTTTCTATCTTTCTTTTAGTAGCAGTGTCCTGTGGAGACAGACAGAGCAAAGCTGCATCCTGGGCCTGACTATGAATCTCAAAAACCATTTCTTCCATAGATGAAACAAAACCACTTATAGCAGACTGACTTAAACCAGCAACTTTTAGTTGTGCAACAGCAGATGCACACATATCGAAAGTGCTCTTATTTGACTTTAACAATTCAGATGTTGTGGCCACCTCTCCAGCACTGCCAATCTGATCAAGTATTTCAGCATTACTTTGTCCATCTGCCTTGGCAGTCTCCTGGCTATCAATGGTGTCAAAATTCTGCTCACTGACATTTTGATCAGCATGTTTTGTGTGCAGATGTTTCCGAAAACCTGAAAAAGTACCAAACACAGAACCACAACCTGACTCTATGCACTTAAGGTGAAGATTCTTTCCAGGAACTAAACCATGAACTAATCTGAAGTGCCTAAGAAGTATTTTTGAACCATTTAACTCAGCCTGACAAACAAAACACTTCATGAGGACAGAAAATCTTAAGGGACCTAGCTAAGCAGCCTTGCTCTGACCTCAGCAACACGAGGACTCTCTTTCACTTTGCCAACATCTATGTTGTACACAGTGGTCTGAATGAAAGTGTACATGTTGTGTAGCATAGTATTGTAAGATGTGCCAAACACAAAGTGTGCCTTAAACAGTTCGTCAAAGGCACCAAGAGAAGAAGTTGACTTGCATGGAATGGCATGCTGATCAAGAACGATGAAGAACTGGTGAACTGAATTCTTCTGAGGTCCCACGGCCAGGAGATAGGGCTGAGCACTAGCAGTGATGTCTCGAAGATGCTCCTCAATGTTTGTTCCACTCTGAGAAGACAAAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU152598 True 2449 lncRNA 0.38 2 12326934 12329825

Neighbor

gene id symbol gene type direction distance location
CI01000026_12203244_12209526 SHH, SHHA coding upstream 117236 12201358 ~ 12209698 (+)
CI01000026_12192269_12200366 NA coding upstream 126200 12191652 ~ 12200734 (+)
CI01000026_12094316_12125431 NA coding upstream 200670 12094316 ~ 12126264 (+)
CI01000026_12074163_12076475 MNX1 coding upstream 249394 12073813 ~ 12077540 (+)
CI01000026_11862091_11976290 PTPRN2 coding upstream 350644 11862091 ~ 11976290 (+)
CI01000026_12425699_12438163 NA coding downstream 94254 12424079 ~ 12438621 (+)
CI01000026_12486292_12534245 SCRIB coding downstream 156061 12485886 ~ 12534327 (+)
CI01000026_12551009_12554565 NA coding downstream 221184 12551009 ~ 12554565 (+)
CI01000026_12558237_12560933 RGS9BP coding downstream 228412 12558237 ~ 12561618 (+)
CI01000026_12562467_12570436 DPH2 coding downstream 232642 12562467 ~ 12570774 (+)
G134179 NA non-coding upstream 23836 12263695 ~ 12303098 (+)
G134238 NA non-coding upstream 66757 12259947 ~ 12260177 (+)
G134218 NA non-coding upstream 129634 12197090 ~ 12197300 (+)
G134217 NA non-coding upstream 130176 12196501 ~ 12196758 (+)
G134215 NA non-coding upstream 131517 12195184 ~ 12195417 (+)
G134256 NA non-coding downstream 43753 12373578 ~ 12374238 (+)
G134258 NA non-coding downstream 45609 12375434 ~ 12375667 (+)
G134262 NA non-coding downstream 48601 12378426 ~ 12378693 (+)
G134271 NA non-coding downstream 65238 12395063 ~ 12396290 (+)
G134282 NA non-coding downstream 79555 12409380 ~ 12409736 (+)
G133542 NA other upstream 850027 11476117 ~ 11477544 (+)
CI01000026_11241496_11246081 NA other upstream 1071861 11241496 ~ 11246204 (+)
CI01000026_11075931_11078249 MDK, MDKA other upstream 1247854 11075784 ~ 11079080 (+)
G133192 NA other upstream 2164973 10159819 ~ 10161961 (+)
G132667 NA other upstream 2757774 9568739 ~ 9569160 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) G36650 NA non-coding CM030124.1 CM030124.1 41002062 ~ 41002677 (-)