Gene
RNA
| Item | Value |
|---|---|
| gene id | G134271 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000026 |
| NCBI id | null |
| chromosome length | 17172400 |
| location | 12395063 ~ 12396290 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU152688 | True | 1228 | lncRNA | 0.34 | 1 | 12395063 | 12396290 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000026_12203244_12209526 | SHH, SHHA | coding | upstream | 185365 | 12201358 ~ 12209698 (+) |
| CI01000026_12192269_12200366 | NA | coding | upstream | 194329 | 12191652 ~ 12200734 (+) |
| CI01000026_12094316_12125431 | NA | coding | upstream | 268799 | 12094316 ~ 12126264 (+) |
| CI01000026_12074163_12076475 | MNX1 | coding | upstream | 317523 | 12073813 ~ 12077540 (+) |
| CI01000026_11862091_11976290 | PTPRN2 | coding | upstream | 418773 | 11862091 ~ 11976290 (+) |
| CI01000026_12425699_12438163 | NA | coding | downstream | 27789 | 12424079 ~ 12438621 (+) |
| CI01000026_12486292_12534245 | SCRIB | coding | downstream | 89596 | 12485886 ~ 12534327 (+) |
| CI01000026_12551009_12554565 | NA | coding | downstream | 154719 | 12551009 ~ 12554565 (+) |
| CI01000026_12558237_12560933 | RGS9BP | coding | downstream | 161947 | 12558237 ~ 12561618 (+) |
| CI01000026_12562467_12570436 | DPH2 | coding | downstream | 166177 | 12562467 ~ 12570774 (+) |
| G134262 | NA | non-coding | upstream | 16370 | 12378426 ~ 12378693 (+) |
| G134258 | NA | non-coding | upstream | 19396 | 12375434 ~ 12375667 (+) |
| G134256 | NA | non-coding | upstream | 20825 | 12373578 ~ 12374238 (+) |
| G134182 | NA | non-coding | upstream | 65238 | 12326934 ~ 12329825 (+) |
| G134179 | NA | non-coding | upstream | 91965 | 12263695 ~ 12303098 (+) |
| G134282 | NA | non-coding | downstream | 13090 | 12409380 ~ 12409736 (+) |
| G134329 | NA | non-coding | downstream | 55626 | 12451916 ~ 12456462 (+) |
| G134314 | NA | non-coding | downstream | 60339 | 12456629 ~ 12481470 (+) |
| G134345 | NA | non-coding | downstream | 106972 | 12503262 ~ 12604181 (+) |
| G133542 | NA | other | upstream | 918156 | 11476117 ~ 11477544 (+) |
| CI01000026_11241496_11246081 | NA | other | upstream | 1139990 | 11241496 ~ 11246204 (+) |
| CI01000026_11075931_11078249 | MDK, MDKA | other | upstream | 1315983 | 11075784 ~ 11079080 (+) |
| G133192 | NA | other | upstream | 2233102 | 10159819 ~ 10161961 (+) |
| G132667 | NA | other | upstream | 2825903 | 9568739 ~ 9569160 (+) |
