G134306


Basic Information

Item Value
gene id G134306
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 12595796 ~ 12597699 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU152728
ACAAACTCCCGGTTCCTCCGACCACTCGCAGACTCCTCAAAGGTGTAGCTCTCGCTGCTGATCATGTACGGGTAGATGAGGGCTTGTGGATAGCATTCTGCGATCTCCTCTATAACATGCTGAACTGCCATCGCCTGCGGTTTGTCAAGCAGAGCCATCATTTGACTGATCCAGCCAATCAGCAGCCAGCAAGGCACACTAACAATCTCTCTGACCATCAGGTCCATGGTTTCTGCGGGGTACAGTTCTACTAGCTGCAGTAGACGTGGGAACTTGAGCCTGGCCTCATCTGAGTTGAGCTTCAGTGCCTTCAGCATCATCTTCACTACATGTCCAGGCAAGGACTGCAGCTTAGAACTGATTGCCTCTTCTTTCTGTTCACTCTCTCTCAGTCTTCGGTCACAGAAGTTGACCAAGGTCATGTAGGCCTCCACAATACCATGTGTATGCACATGCTGCTGGCTGAAGGACTGCTCTTCCTCATCTGCCTTACGTGCAGCACTTCGCAACAACTCCAGAGCCTGCATCTGAAGACCCTCTACCACCTGGGTGACGGATGAGGCCATTGAAAGTTGGAGAATCTTCTGTACTTTTTCTTCCCCGAGAGTCTCTAGAGCAGAGGGACTGCGATCTGCAGCAGTGGCCATGAGGTCATAGGTGGTGCCCAGAAGGATCTTCTGGTCACGGAGCATCCGAGCAGATGAGCCTTCACTCTGTCTCTCAGCATCCACTGAAAAATACAGTAATGCATCTATCATGAAACTTGGACTGTGACAAGAGTTGAAATGATGTGTATTCTATATAAGAGGGGATGATTCATACTCAAAAGTGGAACAGTCTTGAGCAAAGCATTAATCTTTTCAGCAGATCCAAGTCCAGCACTTCTTCTGTGAGTGAAACGGCTGAAGCTGTGGACCCAGCGAAGCAACCGGGCACCATCAGTCTTTGCATCACGGTAAAGTTCCTTCAACAGCTTGGATGCCA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU152728 True 984 lncRNA 0.50 4 12595796 12597699

Neighbor

gene id symbol gene type direction distance location
CI01000026_12582462_12589223 GAREM, GAREM1 coding upstream 6239 12582304 ~ 12589557 (+)
CI01000026_12562467_12570436 DPH2 coding upstream 25022 12562467 ~ 12570774 (+)
CI01000026_12558237_12560933 RGS9BP coding upstream 34178 12558237 ~ 12561618 (+)
CI01000026_12551009_12554565 NA coding upstream 41231 12551009 ~ 12554565 (+)
CI01000026_12486292_12534245 SCRIB coding upstream 61469 12485886 ~ 12534327 (+)
CI01000026_12653232_12657339 CHPF2 coding downstream 55373 12653072 ~ 12657836 (+)
CI01000026_12706512_12707086 NA coding downstream 107594 12705293 ~ 12707152 (+)
CI01000026_12867260_12871481 NA coding downstream 269512 12867211 ~ 12871720 (+)
CI01000026_12929788_12932668 HRH3 coding downstream 331940 12929639 ~ 12933391 (+)
CI01000026_12966022_12977066 ORC6 coding downstream 367897 12965596 ~ 12977588 (+)
G134314 NA non-coding upstream 114326 12456629 ~ 12481470 (+)
G134329 NA non-coding upstream 139334 12451916 ~ 12456462 (+)
G134282 NA non-coding upstream 186060 12409380 ~ 12409736 (+)
G134271 NA non-coding upstream 199506 12395063 ~ 12396290 (+)
G134348 NA non-coding downstream 6901 12604600 ~ 12605365 (+)
G134350 NA non-coding downstream 11567 12609266 ~ 12609676 (+)
G134356 NA non-coding downstream 19256 12616955 ~ 12617540 (+)
G134357 NA non-coding downstream 21742 12619441 ~ 12621548 (+)
G134359 NA non-coding downstream 24220 12621919 ~ 12622715 (+)
G133542 NA other upstream 1118889 11476117 ~ 11477544 (+)
CI01000026_11241496_11246081 NA other upstream 1340723 11241496 ~ 11246204 (+)
CI01000026_11075931_11078249 MDK, MDKA other upstream 1516716 11075784 ~ 11079080 (+)
G133192 NA other upstream 2433835 10159819 ~ 10161961 (+)
G132667 NA other upstream 3026636 9568739 ~ 9569160 (+)

Expression


Co-expression Network