G134689


Basic Information

Item Value
gene id G134689
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 12789703 ~ 12801607 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU153162
TGCAGTAACCAAATTGGTGGCAGAAAGCAGTGGAAGCTAAAACAGGTGCTGATGTCAACATTGTCCTATACGTTGAATAACACAAGTCCAATGGTATATATTTTCAGTATCATAATTATACTCTTTTAGACATTTTCTAAAGTGTAAGTTCCAATCAGATAATGAAAACTACAAAATTTTGTAGATTGTAAAGTGTGATTGACTGTGCCTATATTAGCTGATGCTAAAAATTTATAATTTGTAAATTCAGATTGTGTATTTCAATGTGATACTGCTGTGGCATCTCCAGAGAAAACACAATGTGTTGAGCCTATTGATGCTCATGTAATGTGCAGCACATATCAGAAATCCCCGGTGTGTTTTTAATGGATACGTAATTCTAAAGCATCTTTGACCAGTGTCTCATTGAGTGCAACAGTCTGAGCAATGACTCGTTTCCTAAATAATTCATCTATATGCATACATTCTTTTTCAAATCATCATGTTTCATTTCATGCTTTGTATTTGCTATGATAAATCAAAGCATTTGAAAAAACTCACAATCTGACAGTTTATAATACTGAAACATTCCATAAATCAATCGAGTTCATCAGTGTACATTTTCAGCTTTTGTTACAGTGTTCTGGTACCCAGGGAATTTTCATTTCCACTTAAACACTGCAACAGCACATTATTTCACTTGTCTTTGTTCGTGTTTTGGTATCATTATAGTTTTCAATTTTATTATCTGCCAAAATGTGGTCTGCCTGAATCCAAAAAGGAGATCAAGTGGTGATTGAACACATATTTGAAGTAATGAAAATACAATATTCTCAAAACCACAGAGATCTGGAAGGAGAGCAGGCTATGAAAGCAAAACAATCTCTGAAATGGCACCCTGAGTCCATATTAGATTTGATAAACCTTCCCGGATTAATGATATATTGTGGTCATCTTAAATATTTAATTTTAATAAAGTTATGATTTTCTCAACTTGAACATGTTAAAAAAACAAAAAAAAAAAACATCAATTGCCTTCCAAATCACAGAAATCAATTTTTTTTTTTCTTTTTATGACTGATGTAGTCTATGCTTCATTCTGTTTAACTGAAACTTGTTTACGGTCACACTTTTTCCTCCCATGAGTTTGTGTAAAAAAAAACAACAACAACCTAAACCCTAAACAAGTACAGCCATGTTGTCGGGGAGGCTCAAATGAAGTGGAAATCTATAGGGACGTGACGGCCAGTGTTTGCGTGTCTATGTTTTCCTCAAGCTTCAGAACTGTTTGGGCATTTGTAGAGTGGGTTGGAGAAAGAGAGTTTGCTTTCCTTTGAGCTGGAGACCTGAATAACACACACAAGCAAAGACAGGCCAAGATGTACAAATGAAAAGCACTGATTATAATTACAGTCCATTTACACAGAGCAATTCTGGAATAGAATTGCATCCCATCATTATGATGAGACATTATGATGTACATTTTTCCCGCATGATTTGTAAGATGCCTTCTTTTCTTTTATACCTTTTTTTTA
>TU153163
TGCAGTAACCAAATTGGTGGCAGAAAGCAGTGGAAGCTAAAACAGGTGCTGATGTCAACATTGTCCTATACGTTGAATAACACAAGTCCAATGGTATATATTTTCAGTATCATAATTATACTCTTTTAGACATTTTCTAAAGTGTAAGTTCCAATCAGATAATGAAAACTACAAAATTTTGTAGATTGTAAAGTGTGATTGACTGTGCCTATATTAGCTGATGCTAAAAATTTATAATTTGTAAATTCAGATTGTGTATTTCAATGTGATACTGCTGTGGCATCTCCAGAGAAAACACAATGTGTTGAGCCTATTGATGCTCATGTAATGTGCAGCACATATCAGAAATCCCCGGTGTGTTTTTAATGGATACGTAATTCTAAAGCATCTTTGACCAGTGTCTCATTGAGTGCAACAGTCTGAGCAATGACTCGTTTCCTAAATAATTCATCTATATGCATACATTCTTTTTCAAATCATCATGTTTCATTTCATGCTTTGTATTTGCTATGATAAATCAAAGCATTTGAAAAAACTCACAATCTGACAGTTTATAATACTGAAACATTCCATAAATCAATCGAGTTCATCAGTGTACATTTTCAGCTTTTGTTACAGTGTTCTGGTACCCAGGGAATTTTCATTTCCACTTAAACACTGCAACAGCACATTATTTCACTTGTCTTTGTTCGTGTTTTGGTATCATTATAGTTTTCAATTTTATTATCTGCCAAAATGTGGTCTGCCTGAATCCAAAAAGGAGATCAAGTGGTGATTGAACACATATTTGAAGTAATGAAAATACAATATTCTCAAAACCACAGAGATCTGGAAGGAGAGCAGGCTATGAAAGCAAAACAATCTCTGAAATGGCACCCTGAGTCCATATTAGATTTGATAAACCTTCCCGGATTAATGATATATTGTGGTCATCTTAAATATTTAATTTTAATAAAGTTATGATTTTCTCAACTTGAACATGTTAAAAAAACAAAAAAAAAAAACATCAATTGCCTTCCAAATCACAGAAATCAATTTTTTTTTTTTTTTTTTTACTGATGTAGTCTATGCTTCATTCTGTTTAACTGAAACTTGTTTACGGTCACACTTTTTCCTCCCATGAGTTTGTGTAAAAAAAAACAACAACAACCTAAACCCTAAACAAGTACAGCCATGTTGTCGGGGAGGCTCAAATGAAGTGGAAATCTATAGGGACGTGACGGCCAGTGTTTGCGTGTCTATGTTTTCCTCAAGCTTCAGAACTGTTTGGGCATTTGTAGAGTGGGTTGGAGAAAGAGAGTTTGCTTTCCTTTGAGCTGGAGACCTTTGGATCATCTTTCCATGGGTAAACGCTAATGTTTAGTTGAGGATGTACAGGCCACCTGGGTCTAACATCAAGGGAGGGCAGCTTGTTCGGCAAGTCAAAGTTTGAGCTATCCAACTCTTCATTAGCAATAAGATCAGAGTTTTTTTGTGAATGTCTCTTTTGAAATAACCAGAACAAAATGACTCCAGATGCAATGACCACCAGGATCACCGCTACACTTAATCCAACACTAACAGCTATCCAATTACCTAGTTTACTATTCGGTATCACAGGTGTTGTGGGAGTAAATGTTTTTTGTTGGCAACGATTCCCAGTCCACTGTGATGGACAAATGCACACTGGTCCATGCTCCTTTACTGCACATCTCCCTCCATTGAGACAGTACCCAAAGGGACACTCATAGCAGCTGGACTCATCAGAGTTAAAAGGATGGCAGTCAACAATATTGTCGCATCGACTCTGATACGCTACGCACTCTGCTGTCGCCTCACACACTAGTTCTCCTTCATCACATATCTTAACAGGGCATCCATATTCATCTTCTCCATTTGGGCAATCTTCAACAGTATCGCAGTGCAGTAGTGCTGGAATACAGCGGTCCATGCAGCGGTATTCTCCCGTCTCACATCCTGTTTCAGGAGGCGTAGTGCCAGGAACCACGCTCGCACACATCTCCTCATCCGAGCGGTCAAGACAGTCCACTTCACCATCACAGTGCCAACTCAGTGGTATACACTCGAACAGATACAAACACTGGAAGTGCTCCATGTGGCATGTTCGTGGGATAGGGGTCACTGGACCTCCAACAAGACATTGCCTAGTGAAAGAGACGTCATCCACAGCAATGTCCGTCCACTGGTCTGCTCCCACTTCTGCCTGAATACTCACTCTGAAGGGTGATGCATTTGATAAGATCACATTAGCATACTGCCAGCTGTCTCCATAGTCTCCACAGGTTGCCCACATTAGCAAGGGTGTTCCACTGTGGCCCACAGTATACACCTTCAGCGTACCCATGTGATGAGAGCCGTACATGTGGAACCAAAAGCGCAGATGACATATTCCGACACTGGCAGGAAACTCCAGCCGGGTTATTAAACTGGCAATGTCTCCTTCTCTCTGGGCACTGGAGTTCACAAACAGGTACCCCCCTCCTCCATTGGGGCTGTGGTCAGCTGATGGTCCCGTCCCATTAAGCATTCTGCCATAGCCTATATCCCAGTCAAAGTCATCGCGAGGATCCTGAGACAGCTGACAGGTCTCCTGCCAATGGCCACCAGGCATATCAAAATTACAAGCTCCTGGAATAATCATGCAGTCTAGCTCATCAGACTCATCCAAACAGTCAGCTTGACCATCACACTCCAAATGATACACAATACAGTCTCCATTATTACACACAAAATCTGTGATAGCAGGGCATGACCCAGGAAGCACAGCTCGTGGTGCACAGTCAATGAACTCCAGGTCATCCAGAGCCGCTCCACCACTCACATCTTGTGTTCGAACCACTTCAAATATGAGAATAAAGTTCCTCAGGTTCCTCAGAGACACTTCCGCTCTTCTCCATTCCCTGTGCATCTGCCGCTGTGTCCACACCGCCCTCAGCTCATTTTCT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU153162 False 1514 lncRNA 0.34 3 12789703 12791470
TU153163 True 2945 lncRNA 0.42 15 12789703 12801607

Neighbor

gene id symbol gene type direction distance location
CI01000026_12706512_12707086 NA coding upstream 82551 12705293 ~ 12707152 (+)
CI01000026_12653232_12657339 CHPF2 coding upstream 131867 12653072 ~ 12657836 (+)
CI01000026_12582462_12589223 GAREM, GAREM1 coding upstream 200146 12582304 ~ 12589557 (+)
CI01000026_12562467_12570436 DPH2 coding upstream 218929 12562467 ~ 12570774 (+)
CI01000026_12558237_12560933 RGS9BP coding upstream 228085 12558237 ~ 12561618 (+)
CI01000026_12867260_12871481 NA coding downstream 65604 12867211 ~ 12871720 (+)
CI01000026_12929788_12932668 HRH3 coding downstream 128032 12929639 ~ 12933391 (+)
CI01000026_12966022_12977066 ORC6 coding downstream 163989 12965596 ~ 12977588 (+)
CI01000026_13019100_13028307 GPT2 coding downstream 216513 13018120 ~ 13029368 (+)
CI01000026_13218786_13290069 PHKB coding downstream 417179 13218786 ~ 13290154 (+)
G134688 NA non-coding upstream 79 12789210 ~ 12789624 (+)
G134686 NA non-coding upstream 1302 12788193 ~ 12788401 (+)
G134317 NA non-coding upstream 53693 12718821 ~ 12736010 (+)
G134301 NA non-coding upstream 60851 12724379 ~ 12728852 (+)
G134325 NA non-coding upstream 80105 12708966 ~ 12709598 (+)
G134691 NA non-coding downstream 2212 12803819 ~ 12810713 (+)
G134699 NA non-coding downstream 47680 12849287 ~ 12849780 (+)
G134702 NA non-coding downstream 49240 12850847 ~ 12944685 (+)
G134694 NA non-coding downstream 79651 12881258 ~ 12883309 (+)
G134753 NA non-coding downstream 183240 12984847 ~ 12997454 (+)
G133542 NA other upstream 1312796 11476117 ~ 11477544 (+)
CI01000026_11241496_11246081 NA other upstream 1534630 11241496 ~ 11246204 (+)
CI01000026_11075931_11078249 MDK, MDKA other upstream 1710623 11075784 ~ 11079080 (+)
G133192 NA other upstream 2627742 10159819 ~ 10161961 (+)
G132667 NA other upstream 3220543 9568739 ~ 9569160 (+)

Expression


Co-expression Network