Gene
RNA
| Item | Value |
|---|---|
| gene id | G134691 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000026 |
| NCBI id | null |
| chromosome length | 17172400 |
| location | 12803819 ~ 12810713 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU153168 | True | 1136 | lncRNA | 0.46 | 4 | 12803819 | 12810713 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000026_12706512_12707086 | NA | coding | upstream | 96667 | 12705293 ~ 12707152 (+) |
| CI01000026_12653232_12657339 | CHPF2 | coding | upstream | 145983 | 12653072 ~ 12657836 (+) |
| CI01000026_12582462_12589223 | GAREM, GAREM1 | coding | upstream | 214262 | 12582304 ~ 12589557 (+) |
| CI01000026_12562467_12570436 | DPH2 | coding | upstream | 233045 | 12562467 ~ 12570774 (+) |
| CI01000026_12558237_12560933 | RGS9BP | coding | upstream | 242201 | 12558237 ~ 12561618 (+) |
| CI01000026_12867260_12871481 | NA | coding | downstream | 56498 | 12867211 ~ 12871720 (+) |
| CI01000026_12929788_12932668 | HRH3 | coding | downstream | 118926 | 12929639 ~ 12933391 (+) |
| CI01000026_12966022_12977066 | ORC6 | coding | downstream | 154883 | 12965596 ~ 12977588 (+) |
| CI01000026_13019100_13028307 | GPT2 | coding | downstream | 207407 | 13018120 ~ 13029368 (+) |
| CI01000026_13218786_13290069 | PHKB | coding | downstream | 408073 | 13218786 ~ 13290154 (+) |
| G134689 | NA | non-coding | upstream | 2212 | 12789703 ~ 12801607 (+) |
| G134688 | NA | non-coding | upstream | 14195 | 12789210 ~ 12789624 (+) |
| G134686 | NA | non-coding | upstream | 15418 | 12788193 ~ 12788401 (+) |
| G134317 | NA | non-coding | upstream | 67809 | 12718821 ~ 12736010 (+) |
| G134301 | NA | non-coding | upstream | 74967 | 12724379 ~ 12728852 (+) |
| G134699 | NA | non-coding | downstream | 38574 | 12849287 ~ 12849780 (+) |
| G134702 | NA | non-coding | downstream | 40134 | 12850847 ~ 12944685 (+) |
| G134694 | NA | non-coding | downstream | 70545 | 12881258 ~ 12883309 (+) |
| G134753 | NA | non-coding | downstream | 174134 | 12984847 ~ 12997454 (+) |
| G134759 | NA | non-coding | downstream | 194052 | 13004765 ~ 13004965 (+) |
| G133542 | NA | other | upstream | 1326912 | 11476117 ~ 11477544 (+) |
| CI01000026_11241496_11246081 | NA | other | upstream | 1548746 | 11241496 ~ 11246204 (+) |
| CI01000026_11075931_11078249 | MDK, MDKA | other | upstream | 1724739 | 11075784 ~ 11079080 (+) |
| G133192 | NA | other | upstream | 2641858 | 10159819 ~ 10161961 (+) |
| G132667 | NA | other | upstream | 3234659 | 9568739 ~ 9569160 (+) |
