G134702


Basic Information

Item Value
gene id G134702
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 12850847 ~ 12944685 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU153206
TATATGTTAAAGATAGCATGTTTATAGGAGATATTGATATCCTTAAACACAATTGTGCTAATAAACATATTAGAAATTTTATAACAGGTGAAACGGCTACTCATAAAAGTTCATTGTGTAACAATGTATTTAGAAATATAAACTGGACTAAAGCTTGGAATATTTGTGAAAAATATTGTTTAAATAATAAAAGTAAAAGAGGTTACATTCAAAGTTTTGACATGGTATATATCCAGCTAAAGGTGTGTTAGAGAGATTTCATTTGGATATTAATTATTCCTGTGATTTTTTTTTTCTCAACAGAAAAATAATCTACTGTCCATCTTTTTTGTAATTGGGTATATACTAAGGTGGATATGGAAGATTTTATCAGAAGGTTATAATAATTTTGATATATGTATATATTACTCCAATGAAAATAATAATCCTTTTATTTTTTTAGTACAACTTTTTATTATTTTGGGGAAGTTCCACATACAGTATAAGAAGAAATGGTCCAAGCCAAATTTCATCCATTTTCTCCAGGAGACCAGGGACTACAGCACTTGTTTTGAGAATATTGTCAACAAAAAAAAGAAAAAAAAAAGACTAAAAGTATTTTTTTTCTCTCTCCCTCTTTAATATGTAGTTTTTATTCTTGCTCATTTGTATGGCAACAATAGTATGAAGAGGGAATGGTAGTCTGAGGGAAGCGCAGAGTAGGACTGCAGTGTATTCACTGTTCTCTAATGAATTCACAAGAAAACGCCTCACGAAATGAGAAAGAGGAAGGAGGGAGAGAGAGAAGAAGACAGACAGACAGACAGGCAAAGGACAAAAACAACAGACAGAAAGTATGAGCAGTAAGAGGAATGGGTAGAGAGGCAGGTGGGCTTGGCTTTGTTTTTCCCCTGGCTGGAATACCCTGGTGTGCACATGTAGGCATATACATATATCTCTCTATGCATGTGTACACATATATAAATGTAGATGTGTGAGGCTCCTACAGCACCAGCCCTTCGTAAGCAGGTCCTTCGGATTCGGGTGACTCTCTCTGCAGACGCAGGTGCTCCAGTGTATTGTGGAAGTGTTTGTTAATCTGCTCTGTCTCCTCGCTGGCCTCCAGGTTTGGGAGATCCTCACGGATCTTCTGGATCAGCTGATTCAGGACTTGGACCGTCACCTGTAAAACAAACACACACACAGCAGACTGGGTAAATCCAG
>TU153204
TGGGGTTAATATTTTTTATTTGTGCAAATGCCGTGAAATCAATGAGATTTTGTTGTAACTGATTTACAATTAGATTCTACATACAATATATGAAGGGAAAGGGAATCATTATTCAAAAAAAAGTAGACAAGATGCAAGAGAAGGCTTCTGACATTGTTTCGATTCACAGCCACAGCTACTCATTCATTAATAGAGTCTATACACGTTCACCCATTCCACGTATTAGTCAACACACTGTCCCACTCCACCAAAGTGTCTGCCATAAAGTAAAAGGGTGAGAAACAAGACTATTCATTAGTTACACAAATGTCTTTAATTCAGCATGGAGTTTAAAATATTAATGCTGAAAAAACAAAGTAGAATCAAGTGTAGGTCCTCTGAACAAAGACCGTAACAATGCATGGCTCAAAGCTCTGCCTTTTTTTCCTCCAGTTTGGCTGGCGGGGAAAGGAAGTGGTGTAGCAACACAAAGTTTTTTTTCTCTCTCCCTCTTTAATATGTAGTTTTTATTCTTGCTCATTTGTATGGCAACAATAGTATGAAGAGGGAATGGTAGTCTGAGGGAAGCGCAGAGTAGGACTGCAGTGTATTCACTGTTCTCTAATGAATTCACAAGAAAACGCCTCACGAAATGAGAAAGAGGAAGGAGGGAGAGAGAGAAGAAGACAGACAGACAGACAGGCAAAGGACAAAAACAACAGACAGAAAGTATGAGCAGTAAGAGGAATGGGTAGAGAGGCAGGTGGGCTTGGCTTTGTTTTTCCCCTGGCTGGAATACCCTGGTGTGCACATGTAGGCATATACATATATCTCTCTATGCATGTGTACACATATATAAATGTAGATGTGTGAGGCTCCTACAGCACCAGCCCTTCGTAAGCAGGTCCTTCGGATTCGGGTGACTCTCTCTGCAGACGCAGGTGCTCCAGTGTATTGTGGAAGTGTTTGTTAATCTGCTCTGTCTCCTCGCTGGCCTCCAGGTTTGGGAGATCCTCACGGATCTTCTGGATCAGCTGATTCAGGACTTGGACCGTCACCGCATCATTCTCTCGCTCATAGAAGCAGATGTATCTGTTGAGGATCTCGATGAAGAGCTGAACTTGCAAAGACGGGTCCATGCACTGGTTAGCGATCTTTAGAGCCTTCTTCAAGCATTCCATCACCCTCCGCCCATCACGAATCTCTTCTCCGCCCTTGTCAGTGTTGCGTCCTGACCAGAAAAGGTGGGCACAAATGCTGACTGCACGGCACTGGTCGGGTTTCTTCAGCAGTTTGGAGGCAGCCAGAGCGCACTGGGTACGCAGGGGCTCATGGTTCTCTTCGCTGAAGCACCGTGTACGCTCAAACGTGCCAATGATCAGAGTTATTGCGGCCAGCTGAGCCTTTGAGTCGCTGATCTCGTCTTCATACAGGGAGAATGCCTGAGACATGAACTCATAGGCAACGGTTTCGTGGTTCTCGAAGCCGATCTCTCCAGCTGCCAGAGCCCCCTGGAGGAAGAGCCTCAGGGGTAACTCTGCCAGCTCTGCTTTGATCAGAGCGCTGATGGTCTGATGGGCGAATGAGAAAATTTTCTGACATTTCTTCTCCCATTTATCATCTGAGGAGGAGTTCTCTTTGTAACGGAAGGCCAGATGATACGCAGCGAACACCAGCGGGGGAAGAGTGTGTCGAATTCTCTGGTT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU153206 False 1203 lncRNA 0.36 2 12850847 12934959
TU153204 True 1685 lncRNA 0.46 5 12933882 12944685

Neighbor

gene id symbol gene type direction distance location
CI01000026_12706512_12707086 NA coding upstream 143695 12705293 ~ 12707152 (+)
CI01000026_12653232_12657339 CHPF2 coding upstream 193011 12653072 ~ 12657836 (+)
CI01000026_12582462_12589223 GAREM, GAREM1 coding upstream 261290 12582304 ~ 12589557 (+)
CI01000026_12562467_12570436 DPH2 coding upstream 280073 12562467 ~ 12570774 (+)
CI01000026_12558237_12560933 RGS9BP coding upstream 289229 12558237 ~ 12561618 (+)
CI01000026_12966022_12977066 ORC6 coding downstream 20911 12965596 ~ 12977588 (+)
CI01000026_13019100_13028307 GPT2 coding downstream 73435 13018120 ~ 13029368 (+)
CI01000026_13218786_13290069 PHKB coding downstream 274101 13218786 ~ 13290154 (+)
CI01000026_13318769_13335447 NA coding downstream 373398 13318083 ~ 13336525 (+)
CI01000026_13356327_13411385 ADAMTS18 coding downstream 411642 13356327 ~ 13411734 (+)
G134699 NA non-coding upstream 1067 12849287 ~ 12849780 (+)
G134691 NA non-coding upstream 40134 12803819 ~ 12810713 (+)
G134689 NA non-coding upstream 49240 12789703 ~ 12801607 (+)
G134688 NA non-coding upstream 61223 12789210 ~ 12789624 (+)
G134686 NA non-coding upstream 62446 12788193 ~ 12788401 (+)
G134753 NA non-coding downstream 40162 12984847 ~ 12997454 (+)
G134759 NA non-coding downstream 60080 13004765 ~ 13004965 (+)
G134761 NA non-coding downstream 60757 13005442 ~ 13005669 (+)
G134762 NA non-coding downstream 61287 13005972 ~ 13006174 (+)
G134701 NA non-coding downstream 88110 13032795 ~ 13033881 (+)
G133542 NA other upstream 1373940 11476117 ~ 11477544 (+)
CI01000026_11241496_11246081 NA other upstream 1595774 11241496 ~ 11246204 (+)
CI01000026_11075931_11078249 MDK, MDKA other upstream 1771767 11075784 ~ 11079080 (+)
G133192 NA other upstream 2688886 10159819 ~ 10161961 (+)
G132667 NA other upstream 3281687 9568739 ~ 9569160 (+)

Expression


Co-expression Network