G134753


Basic Information

Item Value
gene id G134753
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 12984847 ~ 12997454 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU153265
TTTTGACTCTTATAGATGGAGTTACCATTGACATGCATTATACGACTGACAGACCGCAACGGTTGGAGTTAAAAATCATCATTTGTGTTCTACTGAAGAAACAAGTCACCTACATCTTGGATGCCCTGGGGGTAAGCAGATAAACAGCAGATACATTTTCATTTTTGGGTGAACTATCCCTTTAATAAGCCCTGAAAGACAGCATAAAATTTGCGTATTTTGCGCATTTTTGCCAGTGAGAAAGATGTAATCCAGCTAATTATACTACATTATCATCATGCCAATAATCCATTAGTAGGCCTATTCATTGGCTGAAAGCATGAATGTTCAAAGGTGATATGAATCACATTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGGGGGGGGGGGGTTGTGATGAGGTCATTAGACAACATTGTCACCACAGTTAAAGAGAAGGGAGGAAGGCCAGGGTGGGTGTCATGCTGCGTCTAAATGCACCTTGTCAAAGCGCACTGAATCATTAAGTATCACTTTTACTCCGTAGACCGTGGTAAGATGTTGGGCAAAAGACAATGTGCCCTGTCATGGCCACCTGCTGTTCCAGCCTACTATTATCTCATGCCAGCTGAGCAGTACAGCCCTTGTGTGGGAGAGGTTAGCTAAGTCAGAGCAATGTGAGGGTGAGCTCCATGCTCTAAACTGCACCAGGCCATGTTACGTCACTGGCCAATTATATGTTATTTGTGCCAATTTTTGGTGTACAGCACTGCATTTTCAGAGGTTTCAGTTTTGATGTCAGGATGCATTAAGGGAACATGAGCAGGTCAAAGTATAGGGCAATGATTGAGAGATGGAAGAGAAAAGTGAGGCTCTTAAATCCACAAGACAAGAGGCCAGAAAGGAGGAGAATTAATAGAAGAAAGGCTGTATCGAAGTATGTGCAATAGAAAGTGTAACTTGGGGTATATTTTGCTGTAGCAGAATAATGATGGATAGATGAATACCATTTAGCGGGCACAAGGAGGCTGGAAATGAAGTCTTTGGCTTCTTCTGACACATTCTCAAATGCCTCTGCGTCAAAGTCCCATTTTGCGTGCAGAATGTTGTTCATTGTTTCTGCATCGTTGTCACCCATGAATGGAGAAAGGCCACTCAAAAGCATGTATGTGATGACACCAACACTCCACATGTCTGTAGGAAATGACACAAAGTCATAGTTGACAACTTCTGGTGCCAGGAACTCTGGGGTTCCAAAGTTGACCTTCAGCTTTTCTCTGGGTCTGTACTTTCTGGCGAGTCCAAAGTCAATGATCTTGATCTGATTCCCAGTGCTGTTCACACATAAGATATTTTCTGGCTTAAGATCTAAATGAAGAATGTACTGCTGGTGAAGGTACTGAACCCCCTCACAAATCTGCCTGGTAAACACGATGGCATCCAGCTCCGTCAGCTGGTAATTCTCATCAATGATTCGGTCAAACAATTCACCACCCTCCACATATTCCATAATGAGCGTGAGGTTAGTCCGAGACTCGAAAGCATCATACAGCTGAATCAGATTCACATGGTTTAACTGGTTCATAACTCCAATCTCATTCTTCACTTCATCCCTCTCTTTCATTCCCCGGACCTTTATAATCTTAGCAGCAAGCATAAGACCAGAAGACAACTCGGCACACTTGTGTACCTGTCCAAAACGGCCTCCGCCCAGCACCTCACTGGGGTTGACTGCATAATATGAGTTCATGGGAACCTGCTTGGCACTGACGATACGATGTTCGAACGGGGCTGGAAGAGGTGGGCAGTCATCGATGATCAGTAGTTGTGACTCTGCTTTTCTCGGAGGTGCTGATTTCGCTTCTTCTCCATCAAAAAGGGTTGTGTTTTGTGGACTAGGAGCTGCACAGTTCTTTATTGGGTCAGACTCCAAAATCTTCTCAGCAGTTTTATTTTCATTTTTCTTGATAGCTGGTTCAGATCCTGTCTTTATCTCATCATGTTTTGGCACAGGTGTTACCATCTCCACTGTCTCTTTATGTTGTGACTTAACCTCTGCATGCTTGTTAACAGGCTCTTTGAGTTGAGGTTTGTGAGGAACATCAACCTTCTTCTCCAGTTGCTGTTGTTGTTGTCCAAGAACGGATGGTTTCAAAAGGGCCTTGTCACCAATCTGTGAAGCCTCTGTCTGTGTTTGAGTAACCTCAATGTTCGGCTCCACTTGTTGTTCAGGAACTATTGATTTGAGTAAAGCCTTGTCGCCATTCTGTGAAGCATCTGCCTGTCCGAGAGCCCTCTCTCGCTGGCCATTTTTGATCATGTTTAATTCTTGAGCACCCTGCTTGTGCTGCGTAAGGCTTCTTTCTAGTGCCTCCATCCCTTGACACAATAAACTCAGCTTGTGAAGCACCTCTGTCTGGGTACTTTCAATCTGTTCCACTTTACCCTCCAGGTTGTTCAACTTGACCTCCACATTGTTTAGACTACCTATGAGAGTTGGACTCGACTTCTTGACTGTCCCCGATGGAATTCCAGAGTTCTCCAGCCTGCTGCCTTCATACATCTTGGCAATACAAGTGGCCAAAGTCACCTGTTTACTCATGGCTGCCCTGGGCACATTCAGTGCAATGAGAAAATATAGAAATACAGGAAGGCCCACTGATCAGTTCCCCCGTTGGTCTCTACACTTGTCTGAGGTATTGTGTGCCTCTCACAAAACAGACAGCTCAGACAACCCTGTTGCTGGTACGTGCCAGAGA
>TU153266
ATAGACTAAACACAAAATGAAAGGCAAGAACGCATTAAAAGTCTTCTGTTTTCAGTTAAAAAGGTGTCATTTAAGCGGCCCCTAAGTTAATAATTAACCATTTTTACAACAGAAGTGATTCAATCAAAAACCTACTTTAGCTCGATAATAACTTTTTCCTAGAGCTGCTGTAAAGCCAAAACAATCTCTGTTCATTAATTTTCCTATTATCACTGTGAAGCTGCTTTTGTTCTGTATTGTGAAAAGCACTATATAAATGAAGATGTCCTGACTAACAATTGATGGCTACTTTAAGTCTTCATCATCATCAGTGTGTTTTTTGATAGCAGTCTTTCATTTGAAATCCACATTTCAACTTATAGCATTTATAAATCTAAATTTTTCCATTTTAAAAATATATCTAAATGACATATGCTCTCAATGACATAGGCAGAAAAGTTAGTTCATGCATTCATGACCTCAAGGCTAGATTACTGTAATGATCTACTGGGTGTTTGCCCTGTACGCTTAATAAACAAACTCCAGCTGGTCCAAAACGCAGCAACTAGAGTTTTTACTTGAACCAGGAAGTGACCATATTAGCCCAGTTTTGTCAACACTGAATTGGCTCCATATTAAACATTGCAAACATTTTAAAACCTTGCTAATTACATAAGCCCTGAATTGTTTAGCTCCTCAGTATTTGAGTGAGCTCCTATCGCCTTAGAGTCCTTCTTGCTCAATGTGGTCTCAAAATTCTGGCCAGTTGATAATATCTAGATTATCAAAACAGTCCATAACCAGATCAGATGGTGGACCTGCAGCTAGACACGACTACAACACAACCCTGAATGTCAGTGGAGACCATGTCAACTAAATAATCCCAGAATTGTAATTTTGGGTAAACTAATCCTTTAGCACATGGACTCACCCGCCCAGCACCTCACTGGGGTTGACTGCATAATATGAGTTCATGGGAACCTGCTTGGCACTGACGATACGATGTTCGAACGGGGCTGGAAGAGGTGGGCAGTCATCGATGATCAGTAGTTGTGACTCTGCTTTTCTCGGAGGTGCTGATTTCGCTTCTTCTCCATCAAAAAGGGTTGTGTTTTGTGGACTAGGAGCTGCACAGTTCTTTATTGGGTCAGACTCCAAAATCTTCTCAGCAGTTTTATTTTCATTTTTCTTGATAGCTGGTTCAGATCCTGTCTTTATCTCATCATGTTTTGGCACAGGTGTTACCATCTCCACTGTCTCTTTATGTTGTGACTTAACCTCTGCATGCTTGTTAACAGGCTCTTTGAGTTGAGGTTTGTGAGGAACATCAACCTTCTTCTCCAGTTGCTGTTGTTGTTGTCCAAGAACGGATGGTTTCAAAAGGGCCTTGTCACCAATCTGTGAAGCCTCTGTCTGTGTTTGAGTAACCTCAATGTTCGGCTCCACTTGTTGTTCAGGAACTATTGATTTGAGTAAAGCCTTGTCGCCATTCTGTGAAGCATCTGCCTGTCCGAGAGCCCTCTCTCGCTGGCCATTTTTGATCATGTTTAATTCTTGAGCACCCTGCTTGTGCTGCGTAAGGCTTCTTTCTAGTGCCTCCATCCCTTGACACAATAAACTCAGCTTGTGAAGCACCTCTGTCTGGGTACTTTCAATCTGTTCCACTTTACCCTCCAGGTTGTTCAACTTGACCTCCACATTGTTTAGACTACCTATGAGAGTTGGACTCGACTTCTTGACTGTCCCCGATGGAATTCCAGAGTTCTCCAGCCTGCTGCCTTCATACATCTTGGCAATACAAGTGGCCAAAGTCACCTGTTTACTCATGGCTGCCCTGGGCACATTCAGTGCAATGAGAAAATATAGAAATACAGGAAGGCCCACTGATCAGTTCCCCCGTTGGTCTCTACACTTGTCTGAGGTATTGTGTGCCTCTCACAAAACAGACAGCTCAGACAACCCTGTTGCTGGTACGTGCCAGAGA
>TU153264
CGTCATCAGAGAAGAGAAAAGATGTTGCTGCAAGGGGGGAGAGGAAAGCTATTTTGATTAAGGATTACAAGGGCAAATGAAAAATAAAGATGTGCACAGAAATAATTTATAATAAATACTGCAATATTCCATAAAAAAAACAAGAATCAGTTTTGATTTCATAGTGACTTTAAGACTCTGGAATCATATTTATTTCAAGATTCCCATCCTAAGCTATTAGTGTATATCAAACCAGTATCACTTCAAGGAAAGAATTACTCACCGATGATCAGTAGTTGTGACTCTGCTTTTCTCGGAGGTGCTGATTTCGCTTCTTCTCCATCAAAAAGGGTTGTGTTTTGTGGACTAGGAGCTGCACAGTTCTTTATTGGGTCAGACTCCAAAATCTTCTCAGCAGTTTTATTTTCATTTTTCTTGATAGCTGGTTCAGATCCTGTCTTTATCTCATCATGTTTTGGCACAGGTGTTACCATCTCCACTGTCTCTTTATGTTGTGACTTAACCTCTGCATGCTTGTTAACAGGCTCTTTGAGTTGAGGTTTGTGAGGAACATCAACCTTCTTCTCCAGTTGCTGTTGTTGTTGTCCAAGAACGGATGGTTTCAAAAGGGCCTTGTCACCAATCTGTGAAGCCTCTGTCTGTGTTTGAGTAACCTCAATGTTCGGCTCCACTTGTTGTTCAGGAACTATTGATTTGAGTAAAGCCTTGTCGCCATTCTGTGAAGCATCTGCCTGTCCGAGAGCCCTCTCTCGCTGGCCATTTTTGATCATGTTTAATTCTTGAGCACCCTGCTTGTGCTGCGTAAGGCTTCTTTCTAGTGCCTCCATCCCTTGACACAATAAACTCAGCTTGTGAAGCACCTCTGTCTGGGTACTTTCAATCTGTTCCACTTTACCCTCCAGGTTGTTCAACTTGACCTCCACATTGTTTAGACTACCTATGAGAGTTGGACTCGACTTCTTGACTGTCCCCGATGGAATTCCAGAGTTCTCCAGCCTGCTGCCTTCATACATCTTGGCAATACAAGTGGCCAAAGTCACCTGTTTACTCATGGCTGCCCTGGGCACATTCAGTGCAATGAGAAAATATAGAAATACAGGAAGGCCCACTGATCAGTTCCCCCGTTGGTCTCTACACTTGTCTGAGGTATTGTGTGCCTCTCACAAAACAGACAGCTCAGACAACCCTGTTGCTGGTACGTGCCAGAGA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU153265 False 2739 lncRNA 0.45 9 12984847 12997454
TU153266 False 1963 lncRNA 0.42 3 12991446 12997454
TU153264 True 1209 lncRNA 0.43 2 12993247 12997454

Neighbor

gene id symbol gene type direction distance location
CI01000026_12966022_12977066 ORC6 coding upstream 7259 12965596 ~ 12977588 (+)
CI01000026_12929788_12932668 HRH3 coding upstream 51456 12929639 ~ 12933391 (+)
CI01000026_12867260_12871481 NA coding upstream 113127 12867211 ~ 12871720 (+)
CI01000026_12706512_12707086 NA coding upstream 277695 12705293 ~ 12707152 (+)
CI01000026_12653232_12657339 CHPF2 coding upstream 327011 12653072 ~ 12657836 (+)
CI01000026_13019100_13028307 GPT2 coding downstream 20666 13018120 ~ 13029368 (+)
CI01000026_13218786_13290069 PHKB coding downstream 221332 13218786 ~ 13290154 (+)
CI01000026_13318769_13335447 NA coding downstream 320629 13318083 ~ 13336525 (+)
CI01000026_13356327_13411385 ADAMTS18 coding downstream 358873 13356327 ~ 13411734 (+)
CI01000026_13705684_13706187 NA coding downstream 707530 13704984 ~ 13706562 (+)
G134702 NA non-coding upstream 40162 12850847 ~ 12944685 (+)
G134694 NA non-coding upstream 101538 12881258 ~ 12883309 (+)
G134699 NA non-coding upstream 135067 12849287 ~ 12849780 (+)
G134691 NA non-coding upstream 174134 12803819 ~ 12810713 (+)
G134689 NA non-coding upstream 183240 12789703 ~ 12801607 (+)
G134759 NA non-coding downstream 7311 13004765 ~ 13004965 (+)
G134761 NA non-coding downstream 7988 13005442 ~ 13005669 (+)
G134762 NA non-coding downstream 8518 13005972 ~ 13006174 (+)
G134701 NA non-coding downstream 35341 13032795 ~ 13033881 (+)
G134772 NA non-coding downstream 59866 13057320 ~ 13116992 (+)
G133542 NA other upstream 1507940 11476117 ~ 11477544 (+)
CI01000026_11241496_11246081 NA other upstream 1729774 11241496 ~ 11246204 (+)
CI01000026_11075931_11078249 MDK, MDKA other upstream 1905767 11075784 ~ 11079080 (+)
G133192 NA other upstream 2822886 10159819 ~ 10161961 (+)
G132667 NA other upstream 3415687 9568739 ~ 9569160 (+)

Expression


Co-expression Network