XLOC_008542 (hic1)


Basic Information

Item Value
gene id XLOC_008542
gene name hic1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 25681044 ~ 25690267 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017072
CAAACACGAGCAGAGCGGGACACAAGCGGAGCAGGCTAAAGGACAAGGGACAACGCGGAAGAAGCTGGAAACACCGGGGAAAGTTTACGTTTTAAAAAGGGATTTGGACGACTGGGGATTCTGGGACGGGGGAAATCCCGTAAGGGGAAAGTCGAGATCGGCAGGAGCATCAGACATGAATCCGAGGTATTGGTCTGAACTCGATGCTGGATGCCATGGAAGTTCCAAGTCATGCTAGGCACCTCCTCTTGCAATTGAACACACAACGAACCAAAGGCTTCTTGTGTGATGTTATTATCGTGGTGCAGAATGCACTGTTCCGTGCTCATAAGAACATCCTGGCAGCCAGTAGCCTCTACCTTAAGTCTCTTGTTGTTCATGACAACCTTATCAATCTGGACCATGAGATGGTCAGTCCAGGTGTGTTTCGAGTCATTCTTGACTATATCTACACAGGACGTTTAAGTGAATGTGACCCCACCTCTCCAAATGAGCCAAATATAGGGGCAGTGTTGGCAGCTGCAAGTTACCTGCAACTTCTGGATCTGGTCACCCTATGCAAAAAGAAGCTGAAAAAGAATAGGAAGTACCATTTAAGTCATAACCCTACATTTTTATCGTACAAATTAAGCCTCAGTGGTGTGGGGGGAGGACCGTTTCCAATATCTACCCCTGTCATCCACCCTTGCCACACTGTAGTGACCACCCCACGACCTACAACATTAGAGGACCTGCCCTCCATCCCACTGCCCCCCCATGCGGGAGAAATTTATGCACCAGCTCCCATCAAGGGTCCACCACCTTACCCCCCAACAAAGGCATCCCTGTCACCACAGTCCAGTCTTTGCTTGCCTCCCAATGAAAGGAATTGTTCATCGGTTTATGGCCTTGACCTGTCTAAGAAAAGCCCAAATTCCCAGTCTCAGCTTTCTTCTGGCAATCCCCACTTGATCTCTTCACTCCACCCAGATGAGGAGCCTGAAGGCGAGCTTGACCAAAGTACCAGTCCCATGCTCAGTCCCAACGATGGTTCTAGAAAAATGGACACAGGCCATCATATGGGGTCTCTCACCCCACACCCCTTCCCACTACCCAACCATCCACTTGCACCCAATCTTCCCCATCTGCATCGTTCTCAGGGACAGGAACAGTACCCCTGCCCTCCAAGCCCAGAACCCATAGAGGACACCAGAGATCAGCGACGCGATGCTTCCAACATCTATCGGTGGGTGAAGAATGAGCCTTCCAACCCAGAGGATGAAGATGAGGACGATGAAGAGGATGACAGTGGGGGAATGGGTGAGCAGGATAAAGAGAGACATCACCAGCACATGAACCACCATAAAAGCAATGAGGAAAAACTGAACACAAATGAGCGGGGCTATGACAGAGGGACCTGCGATGATGGCGAGGATGAGAATGGAACTGGCAGCGAGGAAACCGGAAGCAGTGAGGGTCGTCCATCTCCTCCTGTACCAGGTGGAAGGTATCACATGCCATATGAGCCAGAGAGTTTCGGAGATAACTTGTATGTGTGCATCCCCTGTGACAAAGGCTTTCCCAGCTCAGAGCAACTCAATGCACATGTAGAAACCCATACAGAGGAAGAGTTAAACAATGGAAGTGAGATGGACAGCAGCAATAACAGCAACAGTAAACCTACTACTGTCCGTGCACCTACAAGCTTGAACAGCTCTAGTGGCCTCCACAGCCCTTACCACGATGGCAAGTTGGCACAAAACCTCCATTCCATTGGTCTCGGGGAGATCATTCGACCATATCGATGTTCTTCCTGCGACAAGTCTTATAAAGATCCTGCCACCCTGCGGCAACATGAGAAAACCCACTGGCTGACACGTCCATACCCCTGTAGCATCTGTGGGAAGAAGTTCACCCAACGTGGTACCATGACACGTCACATGCGCAGTCACTTGGGCCTTAAACCCTTCGCCTGTGATGCCTGTGGCATGCGCTTCACTCGGCAGTATCGTCTGACGGAACATATGCGCATCCACTCCGGAGAGAAGCCCTATGAGTGCCAGGTGTGTGGAGGCAAGTTTGCTCAGCAGCGCAACCTCATCAGTCACATGAAGATGCACAGCAGTGGAGCTGCTGGCGGAGGACTAACTCCTGACGGGAAGCTGAAGATAGACTTCTCTGAGGGGATTTATCCTCTGAGCAAGTACACAGCTGAGCATCTGGGTCTGAAGCAGGAGAAAACCTCAGACCTTCTTGCAGCTTCTCAACACCTCCTTGCTGATGCCAAGGCCATGGAGAGCCTCTACCCGCTGTCAAAACTGGCTGTAGATCAACTCGGCCTTGCCCACAAAATGGACATCCTGAACTCGTCACTTCCACCCACTTCCCAGCAGCTCTCAGCAGAGTCCCGCACCATTGATCGCTACTCTCCCAGCTAGAGGGGGGGAACCACTAACTTTAATTTCCAAAGAGACATCACTGTATACCAATCACAGTATTCAACTCTCACCTCATCGTCATGTGGACCTGCACCTCAAT
>TCONS_00017073
GGCAGTTCAAAGTTGAAACGTCAGAAATGACTCCAAAAGACTGTTGAGATGATCATTAAGGGAGACTTAGATCGGATGGCAGAAGAGATCGGGCATCCAGGTATTGGTCTGAACTCGATGCTGGATGCCATGGAAGTTCCAAGTCATGCTAGGCACCTCCTCTTGCAATTGAACACACAACGAACCAAAGGCTTCTTGTGTGATGTTATTATCGTGGTGCAGAATGCACTGTTCCGTGCTCATAAGAACATCCTGGCAGCCAGTAGCCTCTACCTTAAGTCTCTTGTTGTTCATGACAACCTTATCAATCTGGACCATGAGATGGTCAGTCCAGGTGTGTTTCGAGTCATTCTTGACTATATCTACACAGGACGTTTAAGTGAATGTGACCCCACCTCTCCAAATGAGCCAAATATAGGGGCAGTGTTGGCAGCTGCAAGTTACCTGCAACTTCTGGATCTGGTCACCCTATGCAAAAAGAAGCTGAAAAAGAATAGGAAGTACCATTTAAGTCATAACCCTACATTTTTATCGTACAAATTAAGCCTCAGTGGTGTGGGGGGAGGACCGTTTCCAATATCTACCCCTGTCATCCACCCTTGCCACACTGTAGTGACCACCCCACGACCTAC

Function

symbol description
hic1 Enables DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within intrinsic apoptotic signaling pathway in response to DNA damage and negative regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human HIC1 (HIC ZBTB transcriptional repressor 1).

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0008630 intrinsic apoptotic signaling pathway in response to DNA damage biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040713-2 Enables DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within intrinsic apoptotic signaling pathway in response to DNA damage and negative regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human HIC1 (HIC ZBTB transcriptional repressor 1).

Ensembl:

ensembl_id ENSDARG00000055493

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017072 False 2517 mRNA 0.51 2 25681044 25690267
TCONS_00017073 True 632 mRNA 0.46 2 25683069 25688468

Neighbor

gene id symbol gene type direction distance location
XLOC_008541 CT027805.2 coding upstream 13343 25667587 ~ 25667701 (+)
XLOC_008540 tsr1 coding upstream 24713 25635326 ~ 25656331 (+)
XLOC_008539 NA coding upstream 110445 25568937 ~ 25570599 (+)
XLOC_008538 npat coding upstream 138452 25528290 ~ 25542592 (+)
XLOC_008537 zgc:152863 coding upstream 181526 25489406 ~ 25499518 (+)
XLOC_008543 NA coding downstream 206198 25896465 ~ 25902650 (+)
XLOC_008544 CR848822.1 coding downstream 416048 26106315 ~ 26106433 (+)
XLOC_008545 rtn4rl1b coding downstream 709271 26399538 ~ 26402301 (+)
XLOC_008546 CABZ01021926.1 coding downstream 749846 26440113 ~ 26440227 (+)
XLOC_008547 slc13a5b coding downstream 883409 26573676 ~ 26593684 (+)
XLOC_008463 BX663520.1 misc upstream 4428762 21252191 ~ 21252282 (+)
XLOC_008536 CU856359.1 non-coding upstream 211199 25469729 ~ 25469845 (+)
XLOC_008533 NA non-coding upstream 281470 25395901 ~ 25399574 (+)
XLOC_008532 NA non-coding upstream 303550 25370567 ~ 25377494 (+)
XLOC_008549 NA non-coding downstream 985718 26675985 ~ 26680699 (+)
XLOC_008552 AL954322.1 non-coding downstream 1606409 27296676 ~ 27300833 (+)

Expression


Co-expression Network