G142512


Basic Information

Item Value
gene id G142512
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 8403385 ~ 8403776 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU161952
CACACATCAGTGGGTCTGTATTAAATCCTCCGCCTTCACAGAAACACACGTTTACACTGCGCTTTGGCTGGATCACACTTGTCTCTCACCAGCTCAGCTTTACTGAACACACTTGGAGGGATTGCTATGGCAACTGGTTGCTATGGGTGATGTGACACCACTACATGCTCATCTTGGTGAGGGAAAGAGGGAGTTGGACCACAGAGGAGAGGAATGGAAGCGGAGAGTCGCAGATTTTATTTTGAATGCTGAACAAATCGACGAGCTGGGTTGAAAAAGTTGTGACAACCATCTGTCTCTGGGCGGACAGCCGTGATGGAAGCCGTCTCTCTCCCTGCTTATTTTGGGTCTCCATCACCCTCCCACTGATGAATCCTCTTCAGTAACAACAGAATGGCTCTAAACAAGAACCTGTTGATCACGAATGTGGCGAAAATGGCCGCGTGCCCCTGACCCGTGCCGACAAACTGGAGAGGATGGCCGAGCATCTTCACAGCAGCACGCTGTCTGCGTCTGGGGCCAACCAGCCCATCCCTTTCCTCACGCTGGAACAGAAGGCTGCCTTCGTCTTCGTCCTCCTCCTCTTCATCTTTCTGGGGCTGCTGATCGTGCGCTGCTTCCGAATCCTTCTGGATCCGTACAGCAGCATGCCAAGTTCCACATGGACAGACTATATGGAAAAAGACACATTCGACTACCGCATTGCCTGAGCTGCTAGCCAGATTTCAGGCTAGGAGACATGCGATGATTACCTCACACGCGCGCACACACACACACACACACACACACACACACGCCAACACACACAACCACCACCACACCTCCTCCACCTCAGAGCCGACTGTATCCCTCAAGTGTTGTTGTTTCGTGATGGTGGTTTTGTGTACTTGTGGGTCTGGATTTTCCATTTGAAAACTGCACTTAAACCCACTTTCATGTCTCGTGTTCTGACAGGGTTTTTCAACTCATAGCTTCCACCACTGATGTCACGTTCGGCATGGCTGAAAAGTCTTAGCGATGAATCTTTTATGTTCGAAACCAGCCAAATAGCTTTATTACAGACAAACAATATGGTTAATTATTTTCTATGTCCAAAGAATGACAAATTAACAATTCCGAAATTGGAAAATAAAAAAGTAGGGTAATCCATTTCTCAATGATTCATTCCACACTTATCATAAAAGCACAGTGCATTGGTTCCAGGATGATTACATTCTCTGAGCTCTTCGGTTTGGGACTCTTGAGCTTTGCGCCTTATAAATCCGTGTGTTTACAGAACAGCCAGAGAAACTGGCCCTGCTGTTATTCAGCTAAATGTCAATCAATGTACTGACCTACCAGCCTCTGTGGGCAAATTGAATGTTTGATTTGCCAGGTCCTTTCCCCACCTCTCTCTACAGTGTTCTTAATAGGACGAGTCGGATTTCCTCTCTGTTGTTCTTCAGTATTTGCTGATGTTGAAATGGACTTCTATCAAACGTTTGCCGTTCTGCCTGGGCTATCAGCGCAGTGTTTCTTTCCTTCTCAAAGTCTGGTTCACCTGTGATTTGCTTGACTTACATGTTCAATAGAAATGAAGCTGAAATAAACAGGTGCGATATGTGTCTTGCGTGCAGAGGAGGTCAATATTACCATTTAGGTGCAACTTAGCTATTGCTTTCGAATCAGTATTGCGGCGGTGTTATTTCTTAATGATACCGACCTGCTGTTCTCACAATGCACATTGTGTCTTAGCTGAGTGGTGTGTACAGTATATTTGAGCCTTTAAAATGCAGAGAGATGCTGGTGACTTTATGAGAAAATGTGCCATGTAGTTTACAAGTGGCTTTTGCATTTTAATGTGCTTTTATATTTGTTTCCAAATAAAAAAAAGATATGTTTACATCTCACCCTAGTGAGTGTCTTAATACATAAAACAACATTAAAATGGAAATGAAAGCACATGTGCATGACAGGGA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU161952 True 392 lncRNA 0.45 1 8403385 8403776

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010022 LO017848.1 coding NC_007127.7 CM002900.2 30301539 ~ 30306358 (+)
eurasian perch (Perca fluviatilis) G125090 NA misc NC_053123.1 CM020920.1 18700887 ~ 18704677 (-)
tiger barb (Puntius tetrazona) G113942 LOC107587908,LOC100536175,LOC103025787 non-coding NC_056714.1 CM032083.1 18133886 ~ 18136989 (+)