CI01000028_03543288_03567292 (CDON)


Basic Information

Item Value
gene id CI01000028_03543288_03567292
gene name CDON
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000028
NCBI id null
chromosome length 9874160
location 3542153 ~ 3567666 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000028_03543288_03567292.mRNA
CTATATAAAGAATAGGCCTATATGTGGGTAACTTAGCTTAGTATTAAACTTCTGCATATTTTATCCCTCACCATTTGTGCTATGGTCATGGATGTTAGCATTTGTGGTTCTTTTTGAGGAGAGGTGTGCTATGGCCTTTCTAAGTGACCAGACTAATATAATATCTTGGAAGTAGATATCAGTTACTCTGAAACTCAATTAATTACTCAATTAATCGAAATTCTAATTGTGGTTACAATTACGTAATCGTTCAAAGGTGCGATTACCAAAAAAAAAAAAAAAGTACAGGGTAGTAGAGTTTTTTTTTTTTCCATTGTTTTAATTTTAGTTTTCATATAACATTATAATACCATGCATATTTTTACTTTTTTTTTTTATTTAAAGAAGAAACCAAACCAATGTATAGTTGACATTTGAGGCTTAGTGCTATAGAAAAGCAATAAAAGTTTTTCAGGAAGAGTGTTTTCAGCTTATTTTCATATAAAAATATGGCATGCAGTTGCTTCAAACAATGGTATAAAGCTATTCAAAACATCATTCAATGTAAATTGTGATAATCGTAATTAATAATCGCAATTACAATTTCAAGCAAATTATCAACAATTATGATTTTTGTCATAATCGTGTAGCCCTACTTGGAAGAGTATAAGTATCTCTTTTGATTCAGGCCAGTTAGCAATCACCCACAACATCCTCTCAACCACTTAGTTAAAGCCACTTAGAACAACCGTAATTTAATATGGACATTGATTTATTAGTTATTTCGTTCATTCTTTCTACTAGCATTTTTGATTACTCTTTCTGCTAACAAAAGTTCTCACAGTTCAAATGACGTAGTTTACCTTATTTAAATCCATTTTACAGAATTATGAAGATTTTCCTCCACAATCAACACAAAATGTGGCAAAAGTCTGCATATTGCATGTTTGGCTAGTAACAGCCTTTGTTGTCATTATTGTTGCATGAACCAAGTTAAACTATGTCATTTACCATCTTCTGCCTTTTCAGTCATTGTATTGGCCATGACTGTTTTTTTTTTAACATTTCTGAATTGTCTTTGTGTTTCAGGTGTGGAGTGTGTGTGGAGGGGGTGTGTGTTAGGCCCCAGGTTAGTGCACAGAGGTGAAACAGCGTCATGGAGGACGGTGGCCTGAGATTATTGTCCGCTGTGCTGTGTGTGTGCCATACCCTCCTCCTCAACTGCCCATCTGTTCTGTCTCTCTCTTTTCGTGTGGAGCCTCTCTGTGTGGTTCAGAAGCAGGGTGAAGCGGTCCACCTGCGTTGTACAGCACGTCCAGCTACAGCCAGACTCAGCTGGCTCTTTCAGGGTCGACCGCTAGACCCCAGCCACCAGTCTGGTGTGGAACTTAGTCCAGGCTCCCTCTCACTGTCATCCCTCCAACCGGCTCTCACAGGCTCCTACCAGTGCTTGGCTCACTCAGAGACAGGCTCCATCATCAGCCGGCATGCACGAGTGCTCATTGCAGATATTGAGGAGTTTGCAGAGACCCATCGGAGATCATTTACTGTAAATAAGGGAGACACTGCTGTTATCGAATGCCCACTTCCTCAAAGCAATCCACCTGCTCTGCCACGCTTCCGGATACGGGGGAAATGGCTTGAACAGTCTACAGACGAGTATTTAATCCTGCCCTCCGGGAACCTTCAGATTGTGTCAGTGTCTTCAGATCATCAGGGCATGTATAAGTGTGGTGCTTATAATCCTCTAACCCGAGAGACTCAAGTAGAGGCTCATGGCACTAAACTCATAGTCAAAGATTCAGAAGGCTCTTCACCTGTAAGGATTGTCTATCCCATCACCCCTCGCAATCTTACAGCGCACCAATCTGGATCTCTGACCCTTGAGTGTGTCGTATCAGGAAGTCTTTCTTCTAAAGTCAAATGGATTAAAGATGGGGCGGAGCTTACATTGAGCTCCAAATGGATGTTGTTGCATAGCAACCTGGTTTTGAATGACATTCAAATGAGTGATGGAGGACATTATTGCTGCTCTGTTCTGACTGACCATGGAGCTGTGGTCAGTGTCAACTACACTGTGAATGTGCTTGCGCAAGTAAGCATCCTGCGAGGTTTGTCAGATCAGACTGTGACTGTGGGCTCCTCTGTGAGATTTACCTGTGCTGCCAGTGGTAGTCCAACCCCCAGCATCACATGGCTTCACAACTCCGCCCCTCTTTCTTCTTCATCCCGCCTTCAAATCTCTGGCCTCTCCCTTCATATATCTACAGTAATGGTTCAAGATCAGGGAATGTACCAGTGCCTGTTTGACAATGGCATTAGCTCTGCACAATCGGCGGGAAGACTCAGTGTTCAATCAGGTGTAAGACAGTGGCTTATCATTAAAGAATTTAGGGCTTGCCCTATGGCTCAAACAGGGCATGATTGGAAGAGTGATGAGGGTGATGAACTCTTCCTCTCCATGGGTGAGAAGGGGCTTGGAGAAACTATAGGACCGCCCACTGAAAGAATCAACGACAAACCTACGCCAGAAGCACCAATCATAATCAGCCCACCGCAAACGCACAAACCCAACATGTATGATCTAGAGTGGCGAGCAGGTCGGGACTGGGGCATCCCTATCAATGCATACTTTGTAAAATACCGCAAGGTGGACGACATGGGGAATGTGGTGGGGAACTGGCACACAGTGCGGGTGCCAGGCAGTGAGAAGTCTCTGCCTCTGTCTGAGCTGGAGCCGTCCAGCCTGTATGAGGTTCTGATGGTGGCCCGCAGTGCTGCAGGAGAGGGTCAGCCCGCCATGCTGACCTTCCGCACTGGAAAGGAGAGAAGTTCCCCCAATAAGAACCCCTCCAAGGCTCCAATTGTGTCTCTTCCAGAAAAAACAGTGGAAGATAAAACCACTAATACTTATTATGGAGTGGTCATACATGACAGAGTTCCCGAGGCCCCAGATCGCCCAACTATCTCTATGGCGACAGAAAGCTCTGTCTATGTCACATGGATCCCACGAGCCAATGGTGGCTCTCCAATCACGGCCTTTCGAGTGGAGTACAAGAAGCAAGTCCGCAGTGGTGACTGGATCGTCGCGGCCGATAATATCTCACCACTTAAACTGTCGGTGGAAGTGCGAAACCTGGAACCAGGTTCCACATACCGTTTCCGTGTCATTGCCATGAATAACTATGGTGAAAGCCCTGCTAGCGCCACCTCCAAGCCATACCAGGTGTCCCTGTCGAATCCACCCGTCTCGAACCGTCCAGTCGCTGGCCCTCACATCTCTTCCACTGACGCTGTCAGTGATACTCAGATAATGTTACGCTGGACTTACACTCCCTCCATCAATAACAACACCCCCATCCAGGGATTCTACATCTACTATCGGCCAACAGACAGCGACAATGACAGTGATTATAAGAGGGATGTGGTGGAAGGCTTCAAATACTGGCATATGATTGGTCAACTCCAACCTGAGACGTCCTATGACATCAAGATGCAGTGCTTTAACGACGGCGGCGAGAGCGAATATAGTAACGTAATGATCTGCGAGACCAGAGCCCGACAACCTCCAGGTGTGCCCAGCCAGCGCCCCATAACCCCTCCAGGGTTTTCCCCCGTAGATACACCCAGCCAGCCGGGTGGCTTGCTCTACCTGATCGTGGGCTGTGTTCTGGGCGTCATGGTGCTCATTCTGCTGGTCTTTATCGTCATGTGCTTGTGGAGAAACCGTCAGCAGAACAGTCTTCATAAATACGACCCTCCAAGTTACATGTACCAGTCTGCGGAGATGAATGGTCATGTTCTGGAATATTCCACACTGCCTGGCTCCAGCCATGTGAATGGAAGCGTGCACACGGGCTGTGGACACACCGCTCCCATGATGCCCCAGGCCTGCCATCACCTCCACCACAAATTGCCTAATGGTCTGGCTTTGCTGAATGGATCAGGAGCCCTCTACCCTCCTGGGCATCCTCACACACATGACACCTCTCTGCCCCACAACACCATGGAGTATGAACACCCACACCCTCATCACCTTCATAACGGAGGAGGAATATACACGGCTCTGCCTCAGAATGACTCGTCAGACTGCATGAGCTGTCAAAACTTCTGCAACAACAACAGGTGTTACACGAAAACCAATGGCACTTTCTCGGGCGGCACTCTCCCCCTAATGCACCGCGTGGCAGCGCGCCAACCTGACGGCCTCGAAATGATGCCCCTCAACCCTGTTTTGTCTCGCTGCCATGGACGTGACAGCCCACAGCTCAACAGCTCCCAGGAGAGAGATTCAGCCGAAGAGGTGGAGAAGGGCAAGGCTCCACCCCTTTCCCAGAATTCCCCTTGTCTGCCTGTGGAAACAAAGTCCACCCTCGAGCAGCAGAGAGGAGTTCAGCCTGTGCAACATGAAGACTCCGAGGGTCCTGTGGTGTGTTGGGAACGGCTGGGACTGCCTGATCTGGACTGTAAGGAAAAAACAGCCTGGATCTCTACTGGAAGCTTGACTGGAGATCTCATCCAGCCTACAGTGCAGGAGATCTGAACACATTTAAAGCAGAAAACACTTATCAAATGTGCATACACTCTAAAGACATGAAAGAGCAACATGGAACATGGACAAATTTTTAAAAAGGAAATGGCCAGTGATGGAATGGTCAGAGACATTGTGTGACTTGAAGTGGACACCGAACTGACTGCTTACAGAGCTGGAGAAGACTGACGGGGGAAAGTAGGATGGAAATCAATAGAATGAAAAGAAAGAATGACTTTTATGCAAGGATGGTGGGAAACTTAAAGGCTGAAATGATCCCATTTGTGGGAGGACTTTTAAAAGTAAAAGCAAAAACTCTTTAGATGACTTATTTATTTTTTTGTAGTAGTAAAATATTATTTCATATGAATGTATCTGTTGTAAGA

Function

symbol description
cdon Acts upstream of or within negative regulation of smoothened signaling pathway. Predicted to be located in membrane. Predicted to be integral component of plasma membrane. Is expressed in several structures, including immature eye; mesoderm; nervous system; neural tube; and pectoral fin. Human ortholog(s) of this gene implicated in holoprosencephaly 11. Orthologous to human CDON (cell adhesion associated, oncogene regulated).

GO:

id name namespace
GO:0048598 embryonic morphogenesis biological_process

KEGG:

id description
K20033 CDON, CDO; cell adhesion molecule-related/down-regulated by oncogenes

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000028_03543288_03567292.mRNA True 4896 mRNA 0.46 19 3542153 3567666

Neighbor

gene id symbol gene type direction distance location
CI01000028_03522456_03524618 NA coding upstream 16946 3521969 ~ 3525207 (+)
CI01000028_03426799_03428872 NA coding upstream 112003 3424865 ~ 3430150 (+)
CI01000028_03407831_03417774 NA coding upstream 123587 3407831 ~ 3418566 (+)
CI01000028_03385787_03404112 PRDM10 coding upstream 137937 3385542 ~ 3404216 (+)
CI01000028_03334040_03380006 APLP2 coding upstream 161600 3334040 ~ 3380553 (+)
CI01000028_03650532_03667920 BCL9L coding downstream 80739 3648405 ~ 3668011 (+)
CI01000028_03677140_03686568 DDX6 coding downstream 106778 3674444 ~ 3686976 (+)
CI01000028_03689833_03704593 TREH coding downstream 121855 3689521 ~ 3704739 (+)
CI01000028_03946366_03958585 NA coding downstream 376855 3944521 ~ 3959823 (+)
CI01000028_04145294_04156879 NA coding downstream 577277 4144943 ~ 4158653 (+)
G146652 NA non-coding upstream 58437 3483447 ~ 3483716 (+)
G146651 NA non-coding upstream 58760 3483168 ~ 3483393 (+)
G146635 NA non-coding upstream 59664 3466595 ~ 3482489 (+)
G146627 NA non-coding upstream 106038 3435822 ~ 3436115 (+)
G146617 NA non-coding upstream 117668 3424273 ~ 3424485 (+)
G146765 NA non-coding downstream 259818 3827484 ~ 3828821 (+)
G146767 NA non-coding downstream 265025 3832691 ~ 3832915 (+)
G146770 NA non-coding downstream 273167 3840833 ~ 3841036 (+)
G146788 NA non-coding downstream 361562 3929228 ~ 3935653 (+)
G145843 NA other upstream 517933 3023146 ~ 3024220 (+)
CI01000028_00525538_00533862 NA other upstream 3020222 524647 ~ 535245 (+)
G147462 NA other downstream 1391037 4958703 ~ 4989838 (+)
G147636 NA other downstream 1648424 5216090 ~ 5216611 (+)
G147693 NA other downstream 1872788 5440454 ~ 5453610 (+)
CI01000028_07470324_07471346 NA other downstream 3902226 7469543 ~ 7471432 (+)
CI01000028_08302370_08504940 SPON1, SPON1A other downstream 4734581 8302247 ~ 8504940 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00004579 NA coding CM030121.1 CM030121.1 54105061 ~ 54122487 (-)