CI01000028_03650532_03667920 (BCL9L)


Basic Information

Item Value
gene id CI01000028_03650532_03667920
gene name BCL9L
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000028
NCBI id null
chromosome length 9874160
location 3648405 ~ 3668011 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000028_03650532_03667920.mRNA
GTATAAAAATAGCAAACAATTATTGAGTTGTATCATCTCTCTTGTGAGGTACATTGTGTTGTTGGCAATGACCTTTGAATCCTGTTGAAGCATTAAGTGTGTTTTGGTGCAGAATGAAGGACAAATGAAGAGATATCTGAAATGAATAGTCATGTTGAGAACTTGTTTAGTGATACGTAAACCTTCCTGAGATGTTATCCTGAAAGTTACAGGTACAGGATATGGCTGTAAGTAATTTTATATCATGTTATCACAATCTAGTTATTTGGTATGACATTGAACAAAATTTTTTAATAATTTTAATACGTATTATTATTTTTATCAAGACTTGACATTAATACCCGCCAAATGCGGGTGGATTTCAGCAGTGACGTGTAACTTCTAGCCACTTTGGCAGGTTTGAATTTTATATATAATATACAGTTTTCATTTGTAGTCTTTTAAAGGCATCTGAAATAATAAACTAAGTGCAATGTAGTGTTGTCAAAAATTTCTATTTTTTCGATACATATCGATACTGAAATATCTGAATACTTATTTTCTGCAGAACAGATACACAATAACATCTGCGCTTTCTCGCTTTCTCATTTCTCCGACAGCGAGTTGACACACAAACCCGCCTTCTCTCACTTGCTCCAGATGAATATTGTAGGTGTTACAGGGCTTGAATTTCGGCATGGTATTTCTGCATATTGTGCATAATTTTACTCATTCCCACAGATGTTGTTCTCTCACCCAAAGTGCACGCACATAAAGCCGCCTCCCAATACGAGATTGAGTTCTTTTTCGCTGCTTATTGTGCGTAAACAGTCAAATACACACAAAATAATGTCAAAATTCCAGTCTTGGTGAGTATTCACGTAAACACAGTCAGTAAGTGATCGTAAACAGTTGAGAAAGAAAACATGGACAATACATCCATTCACGATACAATTAATCTGGATCAATTCTAAAATTTTCCGAATGTATCGCGATTCTCTCTCGAATCAATTCTGAGCTTAGTTTTAACAGCAGATGGCGCTCTAGGCTAGTTTTTAACTTCACACTCAAATGCTCACGAAGAAGAGTGCTGGAGGGTCATGTAAGTGGTTAAATATACTTGCACCTCGTCTCAGAATGCTTTTGTGACGCAAGATTAATGTAAACACAGCCCACTGTGAACACCCTTTTAATTCGCTTCAACCTTTTCGAATTTTATGAATGATTATTTTAGGTTTAAGTGGTGTGTGTAAGGAATTGAAAGCAGGCAGAGTAGGGGCATTTCTAAAGCACGTAGCGCCATCTGCTGTTAAAAACTAAGCTCAGAGTTGATTTGAAAAGCACTCTAAAAATAACAGAATCGATATGGGATAATTGTATCGCAAATCGAGAATCAATGTGTTGTCCCAGCCCTGATGTGTAACAGTATAACGGGTCCTTGTGTCAGGTCTTAAAGTGACAGCAGTGCTTACCTGCTGCCAAATTATGAGATAATATTAAAAATATCTATATCGGTGTCAAAATTGTGGCCAGTGAAAATGCTGAGTGGCTAGTAACTTTGGAAAACCACTAGCCACAGTGGCTGGTGAGCAAAAAAGTTAATGTCAAGCCTTGATTATTATTATTTTATTTAATTTATTTTTTTTATATTAAATAATCATTTAATTAGTAATACATTGTTTTGAATATCCCAGCAAGTTAAATACTTTTATTTTCTTATTGTATTCAGAAGTTGATGAACATAAAGAGATTAGCATCAGTGCAAAAGCAACTTCACATTTTGTAACTCTTGAATTGAAAACAAAATACTAGTAAAACTAATATTATAAAATAGATACTTCAGACTTTAAACTCTGGATGAGCTACAATCGTAATATATCCATCATAAAAAAATAACTGCTTTATGCACAATTGTGACTTCACATGAGATTAACACTCTTTAAGTATAACTGTTATACCGGCATTAGAGATGAAGTGGGTGAAATTTACTGTATGTTATTACTGGAAGTTACAAGACAAACTCTCACACTCTTTCATCTTTCTCTTTCTCTCTCTTCAGCTGTCTGTTTGCAGTCTCACTGACAGACAGACACAACATATTGCTGCAACCCAACCCCCTCAGTTTCCTCTCCATCACCAGCCAATCAAATGCACTCTGAAAATAAACTATCCAATCATGGCAAGCAAGTGACAAGCGGGTCCCAATCACAGCTCCCCAATGTAAACCAAGCACAGCAGCAAGGACCTGCTGGCAACCAAGGGTCAAAGGGCAGTGGGTCTGGGAGCCATGGAGTCAAATCCAACCAGATTTCTCCTGGCAACCCTGGACTGAAGAGCCTCAACCAATCAGGTGGTGGCATTGGTGGGATGATGAAGACCAAGGCAAAGAGGGAAAGGAGTGTCTCCATGGACACAGGAGACCAAAGAGAGTCACTCACCCCTGTTTTGGAGCCAGATGCCAAAGTAGAGGGCGTGATGCGCAGCAAACGCCGGTGTGTGCTGGAGAGAAAGCAGCCGTACAGTGGTGATGAATGGTGTTCAGGGGCCGAAACTGAGGAAGAGGATGAGAAACCGCTTTCTGCCACACACCGTGAGCATGTGATGTGTCCTAGTCAGGGCCACTCTGTTTCATCTGCCACAGGCCATGTTAGTGATCCAGGAGGTCCAGGACTAGGGTCTGGCCATGGACCCAGTATTCGCACAGATCTGCATCCTCGACCCCCTCAGCAAGTAGTGTATGTCTTCACCACCAGCCTAGCCAACAGTGCTGCAGAGGCAGTGATGCATGGCCATACAGACTCCATCCTCTTGTATCATCAGCAGAATGTCCCTCGTACTAAGCTGGACCAGTCTACTAGTGTTGGAAAACTCTCCAACCTAACAGAGCAGATCAGCTCTAGTCATAGTCCACCCATTGGCACACCCAAATCCCAAAGTGGTACGCCCCGGCCAGCTTCCGTTGGTGCAGTTGTGGGAGGACATCTTCCTGGCACCACTACTCCTTCTTCCACAGGCCATCCAGACAGTGAGCCAGCCCAAACCCACCGAGGAGGAGGAACATCAAGCAGCAACAGCCGCTCTGCAGTTCATTCACTGGGCCCAGGAAGTTCAGGCCCACAGTCTGTAGGGGTTTCAGGAACAGAAGGAGTGGACAGGCCAGGTACAATTCCCCACCATGGTGCAGGTGTGTCTCCTTCCTCAAGTCCCTCTGCATTATCTGCACACCGTCAGAGTGAGCTGGGCCAACTTGGAGGGTCAGGAAACACAGATGGCCTCTCTAAGGAGCAGCTGGAACATCGTGAACGCTCTTTGCAGACTCTTCGAGACATTGAGAGGTTGCTTCTCCGTAGTGGAGCCGGTGCTGGCCATGAAGAACCAAGAGGTCCTAATGGCAATCCTAATGGCACTAATATCAACAACAATAATAGTAATGATGGGGGTAGGGGTTTGGAAGATGGTGAGAATGGTGGGGGGAATGCTGGTAATTGCCATAGCAACAATGCTGGTATGCCTCATGTCAGTGGAATGAAAAAATATGAGGAGCCATTACAGTCCATCATCTCACAGACACAAAATCTTGGTGGGCCTGGATTGGATGACTCGCTGATGGGCCCACACCATGGTATGCCACCACATTCCCACCACCTCTCCTCACCCTCAGGGTTAGACATGGGGCCCCTTCTTGGACATGAGAGTGTAACACCAGAGCAGCTAGCTTGGAGGAAGCTACAAGAGGAGTACTACCAGGAGAAAAGGCGGCAACACGAGATGAACCCCCACCAACATCCCCAGCATTTCCGCATGATCCCAGAAATGGGCATGCCTGGGGGACCTCCAATGCTGATGAGAGGCCCCCCACCACCATATCACAGTAAGCCTGGTGATCAACAGTGGGGGCCAGGGCCAATGGTTGGGGGAGGAATGGGAGGGAATTCACGAATAATGGACATGCACCAGGAAGGTCCTCGAGGGCCAAGGTTTCTTGGACAGATGCGAGGTCCGTCAAGTGGTGGGGGTTACCCAGAAAGCCCTGGAGGAGTTCTAGGTATGGAGGGGTTGGGGCCTCAAAGACCTCCAAGGCCAGGCATGGGCTGGTTAGAGGAAATGCCTCCAAACATGGGTGGTGGAGGCCCATTTCATGGGTGCTATCCTCCAGGGGGGCCTGGGGGACCTCCCCAGCACTTTCAAGGTGATTTGGATCGCCCTATAACACGGGAAGAGATGTTCCGCAGACTCCATAGATTAGACATGCAGCAAATATCCAGACAGCAGCAGCAGGCAGGGATTGGAGGCCCTAGGATGATAGATAACTCTGGGGGACCAGGCTTCCCCAATCCTGGAATGGGTGGAGGCCCACCCTCCCGTGGTGATCCAATGGACTTTCCTGGTTCTCGGACTATAATGGGCTCTCCTATTGGTGGAGTAGGCAGTGATGGTGGCCCCACAATGAGAGACATAGTTGACTCTCCATTAGGGGGTAACCTCAATATGAGTATGGGCATGAATATGAATCCACAGCAGCAGCAGTTGCTGGCTCAGAAGCTGAGGGGAGGTCCTGGAATTGGCGGACGGCTTGGAGAGATGTTGAACCCTGAAGACATTTCCCGCATTAGGGCTTCACAGAATGGCCGGGGTAGTTCTAACAAAGGAATGATCCCTGGGCCAGATGGACCTCTTCAGTTCCCCAATCAGAGCTCCTTTCCTGGTAGTCAAGGTGATGGCTCATACATGCAGCAGCCAGGCTCTGATATGTTTGGACCAGATCAGCCAGGTCCTCCCCACATGAGCAGCACCTCAAGACTTAGTCACATTCCCATAAACTCTGGCTCAAGGGGTACAGACCTTGGTGCTCGACACCCTCCTGACCTGCCCATTAGTGTTAACCCAATGGGTTCCCCAGCTATACCACCATCTCACCAGCTTAAATCGCCTTCTCTTAGCCAGGAGCCATCACCCCTCATGCCTTCACCCTCTGCAGCAGGCCTGAAATCACCCAGCCAGTTACCACAGAGTGGTCCATCTCACCCTCCTCTACCAGCAGCCTCTGGGGCTGGAACACCCTCTTCCACCTCTATCAAGTCCCCCCAGGTAATAGGTCCTTCTCTTGGTCTTCGCTCACCATCTGGCTCCCCTGGACACCTTAAATCTCCGACCATGCCTGTCGCTTCACCTGGCTGGACTGCCTCACCCAAGACTGCTATGCCTAGCCCTGGAGGGCCTCCTAGTGTCAAGGTCGCAGGCAATGGAGGCAGCAGTTCCACTGATACAGGTATGTCCCTGCCACCTAGGAGTTCCAACTCAACGCCCATCAGTCAGCCTACCAACTCTATCAATCCTAGCATGCCTTTCACATCCTCACCAGATGCCCCTCCCTCCCAGAATCCTCTATCCCTTATAATGTCTCAGATGTCAAAGTATGCCATGCCTAGCTCCACTCCGCTCTACCATGACGCCATCAAGACAATTGCCACATCGGATGATGAGATGCTACCCGATAGACCCCTCCTACCTGGAATCAACATGTCAGTTGGCAACATGGGAAATCACCAGTCTACACAGATGCTCCTCTCCTCGCAGGGTTCAATGGGACCTCACAGTGGTCCGCAAAGTCCAATGGGAATGGCTCTCCAAGGAGGCCCACAGCTATCCCATGATCCCTCTGGACCTATGCTCCCATCCCCAAACCCTATGGGAATACCAGGAATGACCTCAGCAATAATGGGAGGTGGACCTCCAGATGGAATAGGGCCCTGTAATGTTTCCCCAATGCACCCCCAAAACCAGATGGGAGGATTCCCTCGTATGCAGGGACCCCTTCACTCCCCTATTGGTGGTATGGGGCAACAGTACCCCCAGCGTCCTGATGAGGTCTTATCGCCCCAACAGATGCATCTTCTAAGTAAAGGCATGTCTCACCAGCGGCCTCCTCACCAACCAGACTCTTTTCCATCCATGCCCATGGGTGATGGTCCAGACCTAAGTGAGGTCATTAGGCCCACACATACAGGCATTCCTGAGTTTGATCTTTCCCGTATCATTCCCGCGGACAAGCCCAGCAGCACCCTACAGTACTTCCCCAAGAGTGAAGCCATGTCCCAGCCACAGCAAAATCCTCACCAGGGCCAACCGCCTCCACAGGCTTCTTCTGCTCAACTGCTCAAACAGCTCTCCTCGTCTGGGCCTCCCCATAGCAGCGTCCCCTCCTCCAACCCCCATATTGCTAACCTACAGAACATGATGGCTGAGCAACAGCTGCCCCTACACCCCTCACACTCACATTGTGGGATGCGCCCAGGAATGGGCATGCCTCAGATTGGCTCCAGGGGCATGGGATCAGGAGGTGGGATGGGGCCCATATGCCACCCAGGGCACATGATGGGCAGGACAGGCATGTCTCCTCAACAGCAGCTCCAGCAACAACACCACCATCAGCAACAGCAGGCCATGATGGCCAATAACCTCTTACAACACCCGTCCCACCCTCCCCGTGGCATGCTGTCTCCACAGCAGCACCCTCATAATCTTATGGCCCAGCAGAATCTGATGATGATGCAGGCTAAGCAGCGGGGCATGGCTCTCCCTGGGGAGCACTTTGGCCAGCAGGGCGCTCTCATGTCCCCTCAGGGACCTATGATGGGACCTCCACATTCACAGTCTGGCATGATGGGCCCCCAGAGTCTTAGACAACGGAGCATGTCACTGGACAGCCCATTGGGCTATGGGCCTGGCAGTATGGCCAACATGCCCTTTTAAACTAGCTTATCTGTAATACTGTAAAAACCTTGTTTCTTAATGGCTATTTCTCATTTGGACATGTTTTTATTGCCATTGACTAACTGTGGCA

Function

symbol description
bcl9l Predicted to enable beta-catenin binding activity. Acts upstream of or within lateral mesoderm development and post-anal tail morphogenesis. Predicted to be located in nucleus. Predicted to be part of beta-catenin-TCF complex. Orthologous to human BCL9L (BCL9 like).

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000028_03650532_03667920.mRNA True 6823 mRNA 0.48 7 3648405 3668011

Neighbor

gene id symbol gene type direction distance location
CI01000028_03543288_03567292 CDON coding upstream 80739 3542153 ~ 3567666 (+)
CI01000028_03522456_03524618 NA coding upstream 123198 3521969 ~ 3525207 (+)
CI01000028_03426799_03428872 NA coding upstream 218255 3424865 ~ 3430150 (+)
CI01000028_03407831_03417774 NA coding upstream 229839 3407831 ~ 3418566 (+)
CI01000028_03385787_03404112 PRDM10 coding upstream 244189 3385542 ~ 3404216 (+)
CI01000028_03677140_03686568 DDX6 coding downstream 6433 3674444 ~ 3686976 (+)
CI01000028_03689833_03704593 TREH coding downstream 21510 3689521 ~ 3704739 (+)
CI01000028_03946366_03958585 NA coding downstream 276510 3944521 ~ 3959823 (+)
CI01000028_04145294_04156879 NA coding downstream 476932 4144943 ~ 4158653 (+)
CI01000028_04216684_04219734 NA coding downstream 547375 4215386 ~ 4219777 (+)
G146652 NA non-coding upstream 164689 3483447 ~ 3483716 (+)
G146651 NA non-coding upstream 165012 3483168 ~ 3483393 (+)
G146635 NA non-coding upstream 165916 3466595 ~ 3482489 (+)
G146627 NA non-coding upstream 212290 3435822 ~ 3436115 (+)
G146617 NA non-coding upstream 223920 3424273 ~ 3424485 (+)
G146765 NA non-coding downstream 159473 3827484 ~ 3828821 (+)
G146767 NA non-coding downstream 164680 3832691 ~ 3832915 (+)
G146770 NA non-coding downstream 172822 3840833 ~ 3841036 (+)
G146788 NA non-coding downstream 261217 3929228 ~ 3935653 (+)
G145843 NA other upstream 624185 3023146 ~ 3024220 (+)
CI01000028_00525538_00533862 NA other upstream 3126474 524647 ~ 535245 (+)
G147462 NA other downstream 1290692 4958703 ~ 4989838 (+)
G147636 NA other downstream 1548079 5216090 ~ 5216611 (+)
G147693 NA other downstream 1772443 5440454 ~ 5453610 (+)
CI01000028_07470324_07471346 NA other downstream 3801881 7469543 ~ 7471432 (+)
CI01000028_08302370_08504940 SPON1, SPON1A other downstream 4634236 8302247 ~ 8504940 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location