G146652


Basic Information

Item Value
gene id G146652
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000028
NCBI id null
chromosome length 9874160
location 3483447 ~ 3483716 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU166618
AACGATTTGAAAGCTACAGCAGACTTTGAAGATTTCCAATACTGCATCAGTTAAATGGGCTATTTTCTGTCCTTTTTGGAGCTTGACAGCTCCAGTTCACATTTACTTTCAATGAATGGAAAATTTTGTGCTACAACTCTCCTACTGAGTTTCATGGATAAAAGAAAGTCAGATGGATTCGGAACAACATGAGGGTGAATAAATGACAGAATTTAAATTTTTTTGTGAACTATTTCTGTAGCTCTAAGGGTCAGCGAGAGGGTGGAAAAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU166618 True 270 lncRNA 0.37 1 3483447 3483716

Neighbor

gene id symbol gene type direction distance location
CI01000028_03426799_03428872 NA coding upstream 53297 3424865 ~ 3430150 (+)
CI01000028_03407831_03417774 NA coding upstream 64881 3407831 ~ 3418566 (+)
CI01000028_03385787_03404112 PRDM10 coding upstream 79231 3385542 ~ 3404216 (+)
CI01000028_03334040_03380006 APLP2 coding upstream 102894 3334040 ~ 3380553 (+)
CI01000028_03243337_03247393 SPRED3 coding upstream 235067 3240956 ~ 3248380 (+)
CI01000028_03522456_03524618 NA coding downstream 38253 3521969 ~ 3525207 (+)
CI01000028_03543288_03567292 CDON coding downstream 58437 3542153 ~ 3567666 (+)
CI01000028_03650532_03667920 BCL9L coding downstream 164689 3648405 ~ 3668011 (+)
CI01000028_03677140_03686568 DDX6 coding downstream 190728 3674444 ~ 3686976 (+)
CI01000028_03689833_03704593 TREH coding downstream 205805 3689521 ~ 3704739 (+)
G146651 NA non-coding upstream 54 3483168 ~ 3483393 (+)
G146635 NA non-coding upstream 958 3466595 ~ 3482489 (+)
G146627 NA non-coding upstream 47332 3435822 ~ 3436115 (+)
G146617 NA non-coding upstream 58962 3424273 ~ 3424485 (+)
G146615 NA non-coding upstream 59844 3423325 ~ 3423603 (+)
G146765 NA non-coding downstream 343768 3827484 ~ 3828821 (+)
G146767 NA non-coding downstream 348975 3832691 ~ 3832915 (+)
G146770 NA non-coding downstream 357117 3840833 ~ 3841036 (+)
G146788 NA non-coding downstream 445512 3929228 ~ 3935653 (+)
CI01000028_03946366_03958585 NA non-coding downstream 460884 3944521 ~ 3959823 (+)
G145843 NA other upstream 459227 3023146 ~ 3024220 (+)
CI01000028_00525538_00533862 NA other upstream 2961516 524647 ~ 535245 (+)
G147462 NA other downstream 1474987 4958703 ~ 4989838 (+)
G147636 NA other downstream 1732374 5216090 ~ 5216611 (+)
G147693 NA other downstream 1956738 5440454 ~ 5453610 (+)
CI01000028_07470324_07471346 NA other downstream 3986176 7469543 ~ 7471432 (+)
CI01000028_08302370_08504940 SPON1, SPON1A other downstream 4818531 8302247 ~ 8504940 (+)

Expression


Co-expression Network