CI01000029_04389599_04399047 (OPN8A)


Basic Information

Item Value
gene id CI01000029_04389599_04399047
gene name OPN8A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 4389599 ~ 4399065 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000029_04389599_04399047.mRNA
CAGCTTGGCGTCACAGTGTTCTGAAAGCTCCTGAGCTCCTCACGGTCAATCTGGCCGTGACTGACATTGGTATGGCTCTCAGCATGTACCCACTCTCAATCGCCTCTGCCTTCAACCACACCTGGATTGGAGGTGACCTTTCCTGCCTGTACTATGGCCTGATGGGTATGATCTTCAGCGTGGCCAGCATCATGACTCTGGCCGCCATGGGGTTAGTGAGATACCTGGTGACTGGAAACCCTCCAAAATCAGGAAGCAAGTTTCGGAGAAAAACTATAAGTATATTGATTGGTGTCATCTGGCTTTATTCACTGCTGTGGGCAGTGTTTCCTCTTCTGGGATGGGGCGGATACGGGCCGGAACCCTACGGTTTGGCCTGCTCTGTGGACTGGGCCGGGTACCAGCACTCCTTAAACGGCTCTTCGTTCATTATGTCTTTGGCCATCCTGTGCACCCTGATCCCATGTGGAGTCATACTGTTCTCCTACGCTGGCATCGCCTGGAAGCTCCACAAGGCTTATCAGTCCATCCAGAGCAATGATAACCTGCCCAACTCAGGGGCCGTTGAGAGAAAAGTAACTATGATGGGCATCCTGATCAGCGCTGGCTTTATTGTGTCCTGGACGCCCTATGTGTTCATCAGTCTCTGGACCATGTTTCACTCCGAGGGCAAAGACAGCGTGGCGCCCATTGTCAGCTTGCTACCCTGCCTCTTCGCAAAATGCTCAACGGTGTACAACCCTTTTGTCTACTACGTTTTCCGCAAATCTTTCCGCAGAGAGCTACGGCAGATCCGGATGTGTTGTTACCAAGGCTGTTGTGATGCTGATTGCCATTATAAGAGAGTCTACCAGACCACAGCAGTGAAGGACATGGTTATACAGTGCAGCAATAAAAGAAGAGCCAAAGACAGAAAAGTTCAGAGTTGTAAAACAAAATCCACAGTAGAAAACTGCAAAGCTCTAACAATGCAGGACTTAACAAATGAGATCATGAAGTTAATTCAAAGACAAAGATTCACAGAAGAAATTTCTCTGTTGCAAAAAGGTCAGAGTTGGAGGTCGTCTTGGAGAGGTCAGGTGTCAATCATGAGAAGTAACAAAGGTACTAAATTCACAGGTGCTGTGATTGAACTGCACAAAGCCAACAGTGGAATCAATCAAAAATTTAAATTACTCTCATGCAAAAAGGAATACAGTAGATTTTCAACCCAACTTCTGGATCTCATTTCGGTGCAGTGTGAGAAAGATAAGGAAATTGTCGGCCTGCCAGCCTGTCAATTAGGGGCCGGAAAAGGGGATTGTGTGCTGCTCTCCCAGTTAAAAAATGGGAGGTTGTCCCCAGAAGCTGCTGCTGTTCCCAGTCTTAGCTTTCATGGAGCTCATAAAAAGGATGGGGAATTTAGAACAGAGCCATACTGCCAAATGTAACTCCAGCAAAATATGCAA

Function

symbol description
opn8a Predicted to enable G protein-coupled receptor activity. Acts upstream of or within phototransduction. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including brain; eye; gut; heart; and testis.

NR:

description
unnamed protein product

GO:

id name namespace
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000029_04389599_04399047.mRNA True 1448 mRNA 0.48 8 4389599 4399065

Neighbor

gene id symbol gene type direction distance location
CI01000029_04253844_04257502 NA coding upstream 131921 4253726 ~ 4257678 (+)
CI01000029_04223968_04232159 CLIC4, CLIC5, CLIC5B coding upstream 157290 4223544 ~ 4232309 (+)
CI01000029_04213048_04215977 NA coding upstream 173289 4213048 ~ 4216310 (+)
CI01000029_04143243_04143794 NA coding upstream 245548 4143243 ~ 4144051 (+)
CI01000029_04099307_04107542 LIN9 coding upstream 282052 4099307 ~ 4107547 (+)
CI01000029_04409794_04419021 OPN8B coding downstream 10729 4409794 ~ 4419021 (+)
CI01000029_04478628_04483582 NA coding downstream 77355 4476420 ~ 4483601 (+)
CI01000029_04521600_04521771 NA coding downstream 122535 4521600 ~ 4522751 (+)
CI01000029_04590418_04605290 NA coding downstream 191219 4590284 ~ 4605694 (+)
CI01000029_04981453_04995255 NA coding downstream 582080 4981145 ~ 4995662 (+)
G153672 NA non-coding upstream 27561 4330530 ~ 4362038 (+)
G153663 NA non-coding upstream 94621 4294761 ~ 4294978 (+)
G153660 NA non-coding upstream 103231 4286112 ~ 4286368 (+)
G153659 NA non-coding upstream 103828 4285544 ~ 4285771 (+)
G153658 NA non-coding upstream 104143 4285226 ~ 4285456 (+)
G153703 NA non-coding downstream 28643 4427708 ~ 4428185 (+)
G153707 NA non-coding downstream 149283 4548348 ~ 4914909 (+)
G153775 NA non-coding downstream 294670 4693735 ~ 4709748 (+)
G154352 NA non-coding downstream 532914 4931979 ~ 4932238 (+)
G153475 NA other upstream 827595 3545125 ~ 3562004 (+)
G152451 NA other upstream 1626660 2761594 ~ 2762939 (+)
CI01000029_01526863_01527414 NA other upstream 2861700 1526754 ~ 1527899 (+)
G151495 NA other upstream 4017677 366541 ~ 371922 (+)
G151415 NA other upstream 4164354 170521 ~ 225245 (+)
G153790 NA other downstream 334524 4733589 ~ 4740107 (+)
G154587 NA other downstream 871955 5271020 ~ 5271535 (+)
CI01000029_05461497_05468985 BATF other downstream 1058176 5461497 ~ 5470346 (+)
G155079 NA other downstream 1883620 6282685 ~ 6288398 (+)
G155083 NA other downstream 2032470 6431535 ~ 6490294 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_017602 opn8a coding NC_007131.7 CM002904.2 44250691 ~ 44287488 (+)