CI01000029_04478628_04483582


Basic Information

Item Value
gene id CI01000029_04478628_04483582
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 4476420 ~ 4483601 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000029_04478628_04483582.mRNA
CTATATATAACACTGAATTTTATCAATGAAAGTGCCATCATGCTCAGTTTGGTGCTACCTGCAAACAGGTAATGCAACAAGTGGCACACATAACAACACCTTACTGTGCCATTAGACCAGATCAGGTCTCAGAATCCCAGTGACTCTGCCAACTGTGCCAAATTACCCTGCAAAGCCCATTGGGATTAACATCAAAGCTCATGTCTAGCCAGGGCAAGAATGCTGCCATCTGAGACATACACGCTCAACAAAATCTACCTGCATTTTGCATGAGCAAAATCAAACTACAAGCATGTTGTAGAGGAAATCCAGAAAACACATTTCTGACAGCTGCAGAGAGGAATCATAATGAGAAGAGTGTTTGAGTTGGCACGCATGGCACATATTATCTGCTGGGCACAGAGTCAGACACACGTTAAATCCCTGACTAGACAATGAGCGGGAAACATCCTCATAGCGATGGGTATTTCGTTGAATCTGTGTTAGTGTTGACTCCTTTACGCAAATAATATACAATGAAAATTCAAGAATGTAAATAGATTATGTAATTAGAGCGAGAGAATGTTCCCCCAATCCCGCTTTTACTGATACACTGTACCAAAACAACATTCGAATTCAACAGTCGTTCTAGAACGTTTGTGAATTTGAATTTCGAACTTATTAAATCATAGCGTCTTACCGTCTCCTGGAGATATTGTTTCAATCTCAACACCCATTCTGTTCGCGAGGATAGATCCTACAGTAGTGAGACAGTGAAAGAGAGACTGTGAGACAGCAGCGCTACTGCACTCCGCCCACTGTCATATCAGTCTAACTGTATGCGCGATGGTCAACCCGTGGTGAAACATTAGACAAATTCCGTTGCGATGACCTCAGTTTTTATGAGATTTTGGAAAAGTGTGCTGTGTAACATCTATTAACGGCACTTATAAAATATTATTGGTTTTTTTATATGTTGTACACATGTCTTATCGCAGTTCTTGACTTTGTTTGTTTGAAGTTTAATAATAATAATAAAATCTTTATCGTTATGTTTACCATCTTTGAACTCGCCCTTTAAAACGAACTGTTTGAAAGAATCGATTCGCGGATATGAATCAGACATCCTATCGCGAGTTTAAGCGTGTGTGAACTACAACTCCCAGAATGCCCGAGTCATTCTCTTTCCGTTCGTCCATGACTTCAAATGTCTCCGCGGGGAAATGTGGACACAGCTAAAGTTTACGTGATTTTCTCTCTGTGGAGTTGCCATGGTTTCCGCAGTGTTGTCAATAGTACAATGGTATGTTTGTAATATTACCTTCTGAAAGTGTTAGTTTGCTATTTATCATATATTTTTCCTTTTCATTTTCAGGATTGTTCTAGAATACATGCTAGCATGTGGGATTGCGGCAATACATGTGAATAAAATAGTTTCGCGAACGCACCTTACAGAGAAATTAGTCAGACTATAGTTGTTTTTGCCAGAGTATGATACAGTTATTGTTACTCTAAAGTTCAACTTCAAACAATGAATGTTTTTGTGGTTTGACTATGGTTACCATAGTAACATTTAGTAAGGGGTTAATTTGTGGTATCGCTGTCCAATGTTTAAAGTGACATTTATGTGATTCTTCTCAGTCTTTATTTATGTCTGTTGTGATAAACTGACTTGAGTAATCTTAGTTTTTTTTTTTTTTAAATCATTTTTAATAGTTGTTTTTACTACAAGTTGCATTAAATAATTAATTATCGATTGTTTAATTACCATGCTGGCTAATTCAAAGTCACAACAGTTTTATTGTAGTTTTAATAGCTGTAGTAACTTACCATAGTAATGTTTTTTGTAAGGGGTTGTTTTTGATATCAGCATACATTTTCCAAAGTGACATTTCTTTGATGTTCAATCTTTGCATTTGTCTTGTCTTGCATATATTTTTGTGTATTTCAGGCCTGGGGCATAAAAGAGATGTAGCATCCAAATCTCAGAGGGTTTTATGACGTTGGGGGTCGTGTCAGCCTAAGCTGGTCATCCTTGAGTGGAGCCTCACTCTGGCCAATAGGATTAGAGAGTGAGGGAAGAGGCTTTACCTATTCTTGGAGTATGTGATGGCAGTCTTCTCATACTGAAGCACAGAGTTACATCTGTCTCTCAATTCTGACTCAAAAACCCTTTCCTGTATGACTGGGAACATTGTTTTCCTTTCCATTGGAGAAACTGAGCCAAGCATGGAGCTAGGAAAAGCCAAACTTCTGAGAACAGGGTTAAACACCCTGCACCAAGCCATTCATCCGGTGCACGGAATAGCCTGGACGGACGGTAAGCAGGTCTGTCTCACGTCGTTGTATTCTGTCGAAGGTGAGCCCAAATTTGGCGACACCAATGTCATTGGACAATTCGAACATGTCTTGGGACTCTTCTGGGGGCCGTTGTGCTGCTCCGGGTCCCCGGCGTTGCTTGCCGTGCAGCATAAGAAGCACATCACGGTCTGGCAACTTCAGCTGAGCGCTTTGGAGCAGAACAAACTCCTGTGCACACAGACCTGCGAAATGAGTGAGCCATTCCCACTGCTGTCTCAAGGATGTGTCTGGCATCCCAAAATGGACATCTTAGCTGTTTTGACCAAGCGGGACGCCTCGGTTTTGTTTTCCGTGCGGGTTGATAATCGTCGTGTGAAGGCTGACATCAAGGGTGGCGGTCTGATCCATTGTGCCTGCTGGACAAAAGACGGAAACCTCCTGGTGGTCGCCATCGGTAGCGCATTGCACTCGTACGTTTGGAACGACATCCAAAAAAGCCTGGTGGCGTGTTCCTTCTGCCCTGTTTTCGATGTAGGTGGGTATATCTGTGCCATCGAGTCCACCGACGAGGCTCAAGTGGCTGTAGCAACCGAACTTCCGCTTGATAAACTTTGCGGGCTCAATGCGGGCATCGCCTTCGACCTGCCAGATGAGTCAGAGGCATCGACTTGTCGCCCTTCTCCTGTTTTGACAGTGGATACAGACTATTATGCGGACTCTAGACGGAGATCATGTGATTCTGAACGCTTGGGACACGGCTCTTCATCCGGACCCATAGATCTAACACACATTCTCGCCAAACACAGGAAATCAGACCCGAGCCCTCTCATTCACTTGAGGCGGCGGGATCATTTGTCGGGAAATGGTCAGGACTCGTCACATTTGATTCTAGTGACGTACGAACGCAAGGTCACCACTACAAGGAAGGTCAGCATCCCTGGCATCTTGGTTCCTGACATCATTGCCTTTGATCCGAGCGGGAGCACAGTAGCCGTGGCATCGAACACATGCAACATGATCCTTGTTTACTGTATCACGGATTCTTCCATGCCCAATGTGCAACAGATCCAGCTGCAAAAGAATGAGAGGCCCAAAGGGGTGTGCTTTTTCACCAACAAGATGTTGCTCTTTATGATTGGCCGGCAGAAGTCCAATGATCCGGCTTTCCTCCCCTCCTCCAATACGGACAAGTACATCTTGAGGCTAATAGCCAAGGAGCTGGTATTCGACGAGGAAGGTGCCACCCCGGTGGTTCCCAAGTCCGAGCCGCCAAGCCAACAACATCATGGGATTAGACGTCATTCTGAGAACTTTTCTAAAGAGGACCGTCTATCAATTAAGGATCTAATTCTTCCTGGAGGCTCTGTAATTGTTTCGCCATCCAGCCGGAGAAAATTAATCGAGGAGGTACGCAGCTCAGAGTTGAGCCCTGTGGCAAGCTCTGCCGACTTCTCCGATAGAGCGTCCAGTGCCTCCTCCATTACTCTAGAAAACTACGACATGGATCACATCAGCCGCATGGCCACGCTCGCCGTAGCCGGTCAGGCCAGCCGGGATTCCAGTCGGCCATGTTCTCCCAGGTACGAGGCCTCGGAAAAGTCGTACTCCGATGCCACTCCGCCAAAGAACAGCTTTCAGTCCAAAGAGAAGAACCTGGAGCAGCTGACGCAGAACATGGAGAGGATTTTCACCCGATTTGCTGACGTCCAGCAGTGCCTCTCAGAAATCAGAGACTTCACCCAGAACGGCAAGAAGATCGCATGCAGTTATCCGTCTGCTTATGAACCGCAATACGTGCACATTACGTGTCAGAAACAGTTGTCTGAGAATGTGTATACGGATGAGAGAAGGCCGTTGCTGCTGTGTGGGGGGCGGATCTGCCTGCGGGTGGTACAGGAACTGTTCGGCCTGGCGGTCGTGGAGATGATGCATGGTCCCATGTGGATTGTCTTGGTGGCTGATACAGATGGTTTCGTTCCGCTCACGTTTAAACACAAGGACGAGCTCACGATCAGGAGCGCCAGAAGGAAATCTCCTAGGAAATACTTGAGTGCCTGCTTGATTATTTTTGCTAAAAATAGTTTCTGTTATCCCATACAAAAATGAAGGTATATGTAATGTGGTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000029_04478628_04483582.mRNA False 4405 mRNA 0.45 4 4476420 4483601

Neighbor

gene id symbol gene type direction distance location
CI01000029_04409794_04419021 OPN8B coding upstream 57399 4409794 ~ 4419021 (+)
CI01000029_04389599_04399047 OPN8A coding upstream 77355 4389599 ~ 4399065 (+)
CI01000029_04253844_04257502 NA coding upstream 218742 4253726 ~ 4257678 (+)
CI01000029_04223968_04232159 CLIC4, CLIC5, CLIC5B coding upstream 244111 4223544 ~ 4232309 (+)
CI01000029_04213048_04215977 NA coding upstream 260110 4213048 ~ 4216310 (+)
CI01000029_04521600_04521771 NA coding downstream 37999 4521600 ~ 4522751 (+)
CI01000029_04590418_04605290 NA coding downstream 106683 4590284 ~ 4605694 (+)
CI01000029_04981453_04995255 NA coding downstream 497544 4981145 ~ 4995662 (+)
CI01000029_05041887_05044363 NA coding downstream 557396 5040997 ~ 5045063 (+)
CI01000029_05104260_05107686 BMP2B coding downstream 619618 5103219 ~ 5107804 (+)
G153703 NA non-coding upstream 48235 4427708 ~ 4428185 (+)
G153672 NA non-coding upstream 114382 4330530 ~ 4362038 (+)
G153663 NA non-coding upstream 181442 4294761 ~ 4294978 (+)
G153660 NA non-coding upstream 190052 4286112 ~ 4286368 (+)
G153659 NA non-coding upstream 190649 4285544 ~ 4285771 (+)
G153707 NA non-coding downstream 64747 4548348 ~ 4914909 (+)
G153775 NA non-coding downstream 210134 4693735 ~ 4709748 (+)
G154352 NA non-coding downstream 448378 4931979 ~ 4932238 (+)
G154353 NA non-coding downstream 456866 4940467 ~ 4940703 (+)
G154358 NA non-coding downstream 465703 4949304 ~ 4949565 (+)
G153475 NA other upstream 914416 3545125 ~ 3562004 (+)
G152451 NA other upstream 1713481 2761594 ~ 2762939 (+)
CI01000029_01526863_01527414 NA other upstream 2948521 1526754 ~ 1527899 (+)
G151495 NA other upstream 4104498 366541 ~ 371922 (+)
G151415 NA other upstream 4251175 170521 ~ 225245 (+)
G153790 NA other downstream 249988 4733589 ~ 4740107 (+)
G154587 NA other downstream 787419 5271020 ~ 5271535 (+)
CI01000029_05461497_05468985 BATF other downstream 973640 5461497 ~ 5470346 (+)
G155079 NA other downstream 1799084 6282685 ~ 6288398 (+)
G155083 NA other downstream 1947934 6431535 ~ 6490294 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_017604 wdcp coding NC_007131.7 CM002904.2 44498056 ~ 44508391 (+)