CI01000029_07514095_07516740


Basic Information

Item Value
gene id CI01000029_07514095_07516740
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 7514006 ~ 7516742 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000029_07514095_07516740.mRNA
GTACAAAAGGAAAAAATCTTTGCGTAAATGATAACATTTTCATTTGTGGGTAAACTGTTTTAACCTTTGTATTCTACAGGGATCTCACAATGGCAACAATACACACATTATCTCTGATCCTCCTTGGATTATGCGTCAGCACTCAAATTGTGAAATGCACCTCAGTGTGTTCGGTTGGTGCTTCTGTCGCCCTCTGCATCGATAAAGGTCTTCAAGATGTGCCAGAGCTTCCTCCATATGTAAATAAAGTGGATTTGAGTAAGAACAATATTGCTGAACTCAATGAAACATCCTTTTCTCATCTGGAAGGTCTACAGGTCCTTATACTCATGCACCAAACAACAAGACTTGTGATCAGAAACAACACATTCAGAAGACTCTCTAACTTAACATCACTTCAGCTTGACTACAACAACTTCCTGCGAATGGATACAGGAGCGTTTAACGGATTATCCAACCTTAAAAATCTCACTCTTACTCAGTGCAGTTTAGAGGATACCATTTTGTCTGGTGACTTCCTCAAACCTCTGGTGTCTCTTGAGATGCTTGTCTTACGTGAAAACAACATTAAAAGAATCCAGCCAGCATTGTTCTTTTTAAATATGAGGAGATTCCATGTGCTCGATCTCTCTCGCAACAAAGTGAAGAGCATCTGTGAAGAAGACCTCCTCAGCTTTCAGGGTAAACATTTCACGCTTCTGAAGCTGTCCTCAGTGACACTGCAAGACATGAATGAGTACTGGTTAGGATGGGAAAAGTGTGGAAACCCATTTAAGAACATGTCCGTAAGTGTATTGGACTTATCTGGAAATGGCTTTAATGATAACAATGCAAAGCTTTTCTTTGATGCAATCACTGGTACCAAAATACAAAGTCTCATTCTCAGTAACAGTCACAGCATGGGCAGTTCTTCTGGTAATAATTCAAAAGATCCAAACAAATTCACATTTAAGGGTCTTGAGGCGAGTGGTATTAAGATTTTCGATCTCTCCAATTCAAGCATTTTTGCTCTGTCATATTCAGTATTTAGTTGTTTGTCAGATCTAGAACAAATTACATTAGCAGAAAGTCGGATCAACAAGATTGAAAAAAGTGCATTTTTGGGTATGGCAAATTTGCTGAAGCTAAACCTGTCCAAAAACTTCCTTGGTAATATTGATTCTAATACATTTCAGAATCTAGAGAAGCTTGAGGTGCTTGATTTGTCTTATAATCATATATGGATGCTTGGATATGAATCATTTCGAGGGCTTCCAAATCTACTCAACCTAAATTTAACAGGAAATGCTCTCAAACATTTACATGCATTCGCAACCTTACCAAGACTGGAGAAGCTCTACTTGGGTGACAACAAAATTTTATCTGTCTTTTATTTAATCAAAATTTCCAAATATCTTACAACCCTTTACCTGGAACATAACATACTTTCTTCCTTGTCAGATCTCTTCACAATACTAGAGGAATTTCCTCAAATTGAGGAAATTGTTTTTCGAGGTAATGAGCTTCTTTATTGCCCTAATGAAAGACACAAAGTGCTTTCACAAAAAATACAAATCCTTGATCTTGCATTTGCAGGTTTGGAAGTTATCTGGTCAGAAGGAAAATGTTTAAACGTGTTTAACAATCTTCACCAGTTAAAACAGCTTTCTCTGAGTCACAACTTGCTACAGTCTCTTCCCAAAGACATTTTTAAAGACCTTACCTCTTTGTACTTTTTGGATTTGTCCTTCAACTCTTTGAAGTACCTTCCAAACGGTATATTCCCTGAAAGTCTTCAAATTCTTAATCTTGAATATAATTCTATTTATTCAGTAGATCCAAATCTCTTTAGCACCCTCAGCTACCTCAGCCTGATAAAAAACGATTTCCGTTGTGATTGCAAATTAAGGGATTTCCAAACTTGGCTAAACCAAACCAATGTAATCATTTCTCACTCCATTGAGGATGTGATATGTGCCAGTCCTGAGGATCAGTACATGGTTCCGGTTGTGAGATCCAGCATACAATGTGAGGATGAAGAGGACGAGAGAAACGCTGAAAAACTGAGGCTTGTGCTTTTTATTTTCTGTACCGCACTTATCACGTTACTCACTGCTAGCGCCATCATTTATGTCCGTCGACGTGGCTACATCTTCAAGCTTTACAAAAAACTCATTGGCAAACTTGTGGATGGAAAGCGAGAGGAGCCTGATCCTGATCAATTCTTGTATGATGTGTTTCTTTGTTTTAGTTCCAATGATATTAAGTGGGTAGAAAGAGCACTGCTGAACAGGCTAGACTCTCAGTTCTCAGAGCAGAACACACTCCGCTGCTGCTTTGAGGAGCGAGACTTCATACCCGGGGAGGACAATCTTACCAACATGCGAAATGCTATCCAGAATAGTCATAAAACCCTTTGTGTGGTGTCTGAGCATTTCCTGAAGGACGGCTGGTGCCTAGAAACCTTCACCCTGGCACAGTGCAGGATGCTAGTGGAGCTAAAGGACATTCTGGTGGTGCTGGTTGTAGGGAACATACCGCAGTACAGGCTACTGAAGTACGAACAACTGAGATCCTACATTGAGAACAGAAGATACCTTCTGTGGCCCGATGACAGCCAGGACTTGGAGTGGTTTTATGACCAACTTCTGCATAAAATTAGAAAAAACACCAAGGTTAAACAAACAAATACTAAAGTCAATGAGGGTGAAAAAAATCTTGACGCAGCAAATGTTCAAGCAGACACTGCAGTGTAACT

Function

NR:

description
Tlr5b protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000029_07514095_07516740.mRNA True 2737 mRNA 0.39 1 7514006 7516742

Neighbor

gene id symbol gene type direction distance location
CI01000029_07503905_07506541 TLR5B coding upstream 7171 7503905 ~ 7506835 (+)
CI01000029_07500425_07501888 NA coding upstream 11974 7500325 ~ 7502032 (+)
CI01000029_07426889_07428262 TMEM151BA, TMEM151B coding upstream 85563 7424439 ~ 7428443 (+)
CI01000029_07365981_07371241 HSP90AB1, HSP90BB, HS90B coding upstream 142405 7365981 ~ 7371601 (+)
CI01000029_07338994_07342252 IF2A, EIF2S1B, EIF2S1 coding upstream 171264 7338994 ~ 7342742 (+)
CI01000029_07540982_07543852 NA coding downstream 22200 7538942 ~ 7543895 (+)
CI01000029_07602986_07608307 AIDA, AIDA.L coding downstream 85927 7602669 ~ 7608326 (+)
CI01000029_07643406_07651059 NA coding downstream 126664 7643406 ~ 7651381 (+)
CI01000029_07653640_07663101 NA coding downstream 136592 7653334 ~ 7663101 (+)
CI01000029_07672445_07687240 DUSP10 coding downstream 155703 7672445 ~ 7687873 (+)
G155483 NA non-coding upstream 15207 7498506 ~ 7498799 (+)
G155480 NA non-coding upstream 17710 7495890 ~ 7496296 (+)
G155478 NA non-coding upstream 21992 7491659 ~ 7492014 (+)
G155477 NA non-coding upstream 22852 7490535 ~ 7491154 (+)
G155471 NA non-coding upstream 29732 7483938 ~ 7484274 (+)
G155530 NA non-coding downstream 35763 7552505 ~ 7552704 (+)
G155531 NA non-coding downstream 37861 7554603 ~ 7555012 (+)
G155532 NA non-coding downstream 39184 7555926 ~ 7556192 (+)
G155533 NA non-coding downstream 42501 7559243 ~ 7559584 (+)
G155534 NA non-coding downstream 43115 7559857 ~ 7560191 (+)
CI01000029_06906861_06907157 NA other upstream 606574 6905834 ~ 6908633 (+)
G155083 NA other upstream 1023712 6431535 ~ 6490294 (+)
G155079 NA other upstream 1225608 6282685 ~ 6288398 (+)
CI01000029_05461497_05468985 BATF other upstream 2043660 5461497 ~ 5470346 (+)
G154587 NA other upstream 2242471 5271020 ~ 5271535 (+)
G155522 NA other downstream 118091 7634833 ~ 7637834 (+)
G155627 NA other downstream 414738 7931480 ~ 7932177 (+)
G156007 NA other downstream 1448076 8964818 ~ 9064541 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location