CI01000029_07643406_07651059


Basic Information

Item Value
gene id CI01000029_07643406_07651059
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 7643406 ~ 7651381 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000029_07643406_07651059.mRNA
ATGGATGATATAGAGGCTGAGCTCAATATCGCACATGATGCTCCAGAGGATGACAGCACAAGTCAGGAACGGCTTCAAATGCCTGTTTACATCCAGTATCAGACGAACGAGAAAGGTGTACCCTCAGCGATGAGCTTTCTCAAGACGAACAGAAAGTGTCTAAAGCAGATCAGAGATGCGATGCTGCTTCATAACTGGCAGGAGGCTTCGGTATATTACAACAATTACATTCAGACACTGGAGGCCATGAGTTACACAAAAATACATCCAACGACTTTTGAGATCACGTGGAGAATAGGCACAGAAATTCTGCGTCATCTCCCTAACTCCAACGCTGAAGATTTCAGCGCTGTAAATGAACAGTTGAAATACAATGGTGTTACAGACTTCTCGAAGATCTGTTTGGAGCATAGCTTTCATCTCCTGCTGAACGGGCAGATGGATGAAGCCAAGCGGCAGTTGTCCATCAGACAGAGCTGGAGACATGGCACATTCACGATCGCTCAGGGCGACACCAAAAAACTCATCCAAGCCTACTGCGGTTTCCTAGATTACTTGATCTGGTGTAAGAAGAAGTCCTCTGTTCCTGGAACCGATGAGGCGAGCAGTAACCATGAGATACACAGCTGCTTCAGACAAGCTTCTGTGACCCTGAAGGAAATCATCAGTCAGCCTGGAATCTGGGACCCGTTTGTGTTGAGTTACATTGATATGCTGGAGTTTTACAACGATGAGGACGGCGCTCTGGAGATTCTGGAGAATTACGCTTACAACAAGGATTTCCCAATCAATCCCAACGCTCATGTGTACCTGTACCATTTCCTCAAGAGACACAATGCCCCAGAAGCCAAACTCATCGGTTCATTAATGGTTCTGCGCACTTTAGTCCCGAGTCATGAACTGATGCTGGAGCTCTGCTCTCTCCTGCTGCGCACCAGTCAAATGAGTGATCTAGAAGATGCTTTCTCCATTTCAATGGACCTTCTGGAGTTTTCCAGTTGGAAATGTGACATAAAGGCTTGGTCCTGTCTTCTGAATATCATGAAGATACTCAAACAGAAAAAATGCAAGGAGACTATAAAAAAGGAATGGAAATCCAGGCGACCGCTGTGGTTCCCCTTACACTTCAGAAGCTATATCTCCAAGAAGGACATTGTCAAGAACATCAGCCTTGTGAAGCTTCAGTATACAATAAAATGGCTTTGGAATTTGAGATAAAGTTTGGAAGTGTAACAGAGGAATACACACTCAGGAAGAACAAAAAGATGGAGAAGGTAAAGAAGATGATGGAAAAGGAGAAGAAAAAGATGGAGAAGGAAAAGATGAAGATGGAGAAGGAAAAGGAAAAGATGGAGAGGGAAAAGTTGAAGATGGAGAAGAAAAAGTTGAAGATGGAGAAGAGAAAGTTGAAGATGGAGAAGAAAAAGATGGAGAAGGAAAAGATGGAGAAGGAAAAGATGAAGATGGTGAAGGAAAAGTTGAAGTTGAAGAAGGTGAAGAAAAAGATGAAGAAGACTAAGAAGTCTAAATACAATTTATA

Function

NR:

description
TATA box binding protein (TBP)-associated factor, RNA polymerase I, A

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000029_07643406_07651059.mRNA True 1540 mRNA 0.43 10 7643406 7651381

Neighbor

gene id symbol gene type direction distance location
CI01000029_07602986_07608307 AIDA, AIDA.L coding upstream 35080 7602669 ~ 7608326 (+)
CI01000029_07540982_07543852 NA coding upstream 99511 7538942 ~ 7543895 (+)
CI01000029_07514095_07516740 NA coding upstream 126664 7514006 ~ 7516742 (+)
CI01000029_07503905_07506541 TLR5B coding upstream 136571 7503905 ~ 7506835 (+)
CI01000029_07500425_07501888 NA coding upstream 141374 7500325 ~ 7502032 (+)
CI01000029_07653640_07663101 NA coding downstream 1953 7653334 ~ 7663101 (+)
CI01000029_07672445_07687240 DUSP10 coding downstream 21064 7672445 ~ 7687873 (+)
CI01000029_07885342_07908699 ARHGAP39 coding downstream 232901 7884282 ~ 7909792 (+)
CI01000029_07922221_07926151 NA coding downstream 270840 7922221 ~ 7927536 (+)
CI01000029_07933165_07944093 NA coding downstream 281784 7933165 ~ 7944093 (+)
G155518 NA non-coding upstream 10693 7631715 ~ 7632713 (+)
G155520 NA non-coding upstream 31649 7611324 ~ 7611757 (+)
G155506 NA non-coding upstream 51436 7591009 ~ 7591970 (+)
G155541 NA non-coding upstream 54651 7588442 ~ 7588755 (+)
G155537 NA non-coding upstream 64356 7578815 ~ 7579050 (+)
G155555 NA non-coding downstream 52757 7704138 ~ 7704382 (+)
G155561 NA non-coding downstream 65083 7716464 ~ 7717158 (+)
G155563 NA non-coding downstream 67522 7718903 ~ 7719218 (+)
G155611 NA non-coding downstream 165457 7816838 ~ 7817064 (+)
G155613 NA non-coding downstream 166759 7818140 ~ 7818350 (+)
G155522 NA other upstream 5572 7634833 ~ 7637834 (+)
CI01000029_06906861_06907157 NA other upstream 735974 6905834 ~ 6908633 (+)
G155083 NA other upstream 1153112 6431535 ~ 6490294 (+)
G155079 NA other upstream 1355008 6282685 ~ 6288398 (+)
CI01000029_05461497_05468985 BATF other upstream 2173060 5461497 ~ 5470346 (+)
G155627 NA other downstream 280099 7931480 ~ 7932177 (+)
G156007 NA other downstream 1313437 8964818 ~ 9064541 (+)

Expression


Co-expression Network