CI01000029_07653640_07663101


Basic Information

Item Value
gene id CI01000029_07653640_07663101
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 7653334 ~ 7663101 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000029_07653640_07663101.mRNA
GTATAAATAGATTTAGAGCTTCAGATCCAGAAATAAATAGATTTTGCGCTTCTCGAAGGCGCAACTTGTCTAATAATCGATCGAACAACCTGCGCGTTGTCCTCCAGTGCGGCAGGTGGCGCTGTGAGCCGCTCACACTCACCACTTTTTTTTTTTTTTTGTTGATGAGGAACAGTTGTGTTCACTTTAAACGTCCACGCGTTGAGACGTGCGATAGTAAAGCGTGTATTGAGAAGTTTAGTTTAGTTTATTCACACGTTCTTCATAATATTCTTGAGAGAAAAGCAATTCGTAAAGCAGTGAGCTATGGATGATCTAGAGGCTGAGCTCAATATCGCACATGATGCTCCAGAGGATGACAGCACAAGTCAGGAACGGCTTCAAATTCCTGTTTACATCCAGTATCAGACGAACGAGAAAGGTGCACCCTCATCGATGAACTTTCTCAAGACGAACAGAAAGTGTCTAAAGCAGATCAGAGATGCGATGCTGCTTCATAACTGGCAGGAGGCTTTGGTATATTACAACAATTGCATTCAGACATTGGAGGCCATGAGTGTCATGGGACTGCATCCAACGACTTCTGAGATCATGTGGAGAATAGGCACAGAAATTCTGCGTCATCTCCCTAACGCCACCGCTGAAGATTTCAATGCTGTATATGAACAGTTGAAAAACAATGGAGTCAAAAACTTCTCAAAGATCTGTTTGGAGCATAGCTTTCATCTCCTGCTGAACGGGCAGATGGATGAAGCCAAGAGGCAGTTGTCCATCGGACAGAGCTGGAAACATGGCACATTCACGATCGCTCAGGGCGACACCAAAAAACTCATCCAAGCCTACTGCGGTTTCCTAGATTACTTGATCTGGTGCAAGAAGAAGTCCTCTGTTCCTGGAACCGATGAGATGAGCCGTAACTGTGACATGCACAGCTGCTTCAGACAAGCTTCTGTGACCCTGAAGGAAATCATCAGTCAGCCTGGAATCTGGGACCCGTTTGTGTTGAGTTTCATTGATATGCTGGAGTTTTACAACGATGAGGACGGCGCTCTGGAGGTTCTGGAGAATTACGCTTACAACGAGGATTTTCCAATCAATCCCAACGCTCATGTGTACCTGTACCATTTCCTCAAGAGACACAATGCCCCAGAAGCCAAACTCATCGGTTCATTAAAGGTTCTGCAAACTTTAGTCCCAAGTCATGAACTGATGCTGGAGCTCTGCTCTCTCCTGAAGCACACCAAGCTAATGAGTGATCTAGAAGATGCTTTCTCCATTTCAATGGACCTTCTGGAGTTTGCCAGTTGGAAATGTGACATAAAGGCTTGGTCCTGTCTTCTGAATATTATGAAGATACTCAAACGGAA

Function

NR:

description
TATA box binding protein (TBP)-associated factor, RNA polymerase I, A

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000029_07653640_07663101.mRNA True 1367 mRNA 0.45 8 7653334 7663101

Neighbor

gene id symbol gene type direction distance location
CI01000029_07643406_07651059 NA coding upstream 1953 7643406 ~ 7651381 (+)
CI01000029_07602986_07608307 AIDA, AIDA.L coding upstream 45008 7602669 ~ 7608326 (+)
CI01000029_07540982_07543852 NA coding upstream 109439 7538942 ~ 7543895 (+)
CI01000029_07514095_07516740 NA coding upstream 136592 7514006 ~ 7516742 (+)
CI01000029_07503905_07506541 TLR5B coding upstream 146499 7503905 ~ 7506835 (+)
CI01000029_07672445_07687240 DUSP10 coding downstream 9344 7672445 ~ 7687873 (+)
CI01000029_07885342_07908699 ARHGAP39 coding downstream 221181 7884282 ~ 7909792 (+)
CI01000029_07922221_07926151 NA coding downstream 259120 7922221 ~ 7927536 (+)
CI01000029_07933165_07944093 NA coding downstream 270064 7933165 ~ 7944093 (+)
CI01000029_07997857_08002279 PYCRL coding downstream 334595 7997696 ~ 8003097 (+)
G155518 NA non-coding upstream 20621 7631715 ~ 7632713 (+)
G155520 NA non-coding upstream 41577 7611324 ~ 7611757 (+)
G155506 NA non-coding upstream 61364 7591009 ~ 7591970 (+)
G155541 NA non-coding upstream 64579 7588442 ~ 7588755 (+)
G155537 NA non-coding upstream 74284 7578815 ~ 7579050 (+)
G155555 NA non-coding downstream 41037 7704138 ~ 7704382 (+)
G155561 NA non-coding downstream 53363 7716464 ~ 7717158 (+)
G155563 NA non-coding downstream 55802 7718903 ~ 7719218 (+)
G155611 NA non-coding downstream 153737 7816838 ~ 7817064 (+)
G155613 NA non-coding downstream 155039 7818140 ~ 7818350 (+)
G155522 NA other upstream 15500 7634833 ~ 7637834 (+)
CI01000029_06906861_06907157 NA other upstream 745902 6905834 ~ 6908633 (+)
G155083 NA other upstream 1163040 6431535 ~ 6490294 (+)
G155079 NA other upstream 1364936 6282685 ~ 6288398 (+)
CI01000029_05461497_05468985 BATF other upstream 2182988 5461497 ~ 5470346 (+)
G155627 NA other downstream 268379 7931480 ~ 7932177 (+)
G156007 NA other downstream 1301717 8964818 ~ 9064541 (+)

Expression


Co-expression Network