CI01000029_07997857_08002279 (PYCRL)


Basic Information

Item Value
gene id CI01000029_07997857_08002279
gene name PYCRL
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 7997696 ~ 8003097 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000029_07997857_08002279.mRNA
GTTTATAAATCCATTGATCCAGTCCAGCAGGTGTCAGTGTATCTACTGTTGTTTCTTACATGTAAGTAAAGAAGAAGAACACGTTATCCATATGACACGAGTTTACCATTTAAACACTGATCTGATTCACACGGAGTTGCTTAAGCTGCACTAAATGAACAATGAATCTTTCAGATAGTTCAGTCAAAAGCAGTGATTTACCAGCGATTCAAACTGATGTGTGTCAGCTGAAGATCGGATTCATCGGAGCGGGAAACATGGCTTTTGGAATCGCGCAGGGCATCATCGCGTCAGGGAAGGTTCCACCCTCTAATATAATTATTAGCGCTCCATCCATGAACAACCTTCCTCGCTTTCAGGAGAGAGGCGTTTCTGTCACTCACTTGAATGATGAGGTTGTTGAACGCTCTCGGTTGGTGTTTCTGGCCGTCAAACCTCACCTTGTTCCAAAGGTTCTGAACGGAATCTCCCGGAATGTCACTCAGGAACACATCATCATTTCCATGGCAGCAGGAGTCACTCTAGAAGCACTTGAGGAGCTGTTGCCTGCTGGGACACGCGTGATTCGTATGATGCCAAATCTTCCCTGTGTGCTCTTGGAAGGCGCACTGCTCCTCGCCTCAGGCTCGTGCGCTGGAGAGGAGGAGGAGACTCTCCTGAAGACCCTCCTCAGCCCGTGTGGATTGGTGGAGGCGGGGCCTGAGCCCTGGATTGACGCCCACACAGGCTTGAGTGGCAGCGGCGTCGCGTTTGTGTATGTCTTTGCGGAGGCGCTGGCGGAGGGTGCCGTTAAAATGGGGATGCCGAGCGCTTTGGCTCGACGGATTGCAGCTCAGACAATACTGGGCGCTGGAGTGTTACTGCGTGATACCGGGAAGCTCCCAGCGGAGCTGAAGGCAGAGGTGTGTACGCCTGGAGGGACCACGATTCACGGGATCCACGCGCTGGAGAAGGGAGGATTCAGAGCGGCTGCGATGGGAGCTGTAGAGGCGGCCACTGAAAGAGCCAGAGAACTCGGAAAGAAGTAGATGTTACAGGAACTGAATGTACATCAGATTATAAGAGGGACAATTAACTTAAAACCATTTATGTCTTATTTTATGCACCAAGATAGTTGTTTTGAATGTTGACTACTGGTGCTGAGGGATACCGATAATTGATTCAAAGGTGCTTTTTAAAGTACAGTACTTACAAATGGAATCATCCAAGGATGAGATTGTGTTTTCTATGTAAAGCGGACTAAAGTCTTAAGAGAACAATATAGACCCAGAAACCTAAGTTGCTTGTTTGTACTCTTTAATATGGTTTGTAGTATAATTTTAAGGTACTTGACAAACCAGAAACAAATTCAGAAACCAAAGCAGCTCTGACATGATTACCTTTTTACATACATACACATATATGTGTGTGTGTGTATGTAACAGGCCAGGTAGTTGTTGCAGCCTTTAGCCTCCTCGTTAGAGCGTCCGACTCCCACGCCAGAGACCCGGGTTCGAGGCCCGCGCATTGCGGGGCGAGTAGGACCTGGGTAGAGGGGTTACACACACATATATATATATATATATATGTGTATGTAACCGATAAAAGCAAATTTTCACACTATCAGCATTGGCTGATAGTTTAAAAACAGTCGATAATAAGGGCTGATATATCCTGTCAATCAAAAGAGGGCAGGAAAATGCACTGGATTTGTGCTTTGTGAAGAAAATGCTAAGTATTCAGTATGATGTTTAATATTGAAAGTACTTATGTGAATTAATAACATTCAGAAAATTAAGAAATATTCATTTAAATGTCCACACAGAGTCAAACAATCTGTAAACATCATATGAAACGGTTTCTGTGA

Function

symbol description
pycrl Enables identical protein binding activity. Predicted to be involved in L-proline biosynthetic process. Predicted to act upstream of or within cytidine deamination. Predicted to be located in cytosol; intercellular bridge; and mitotic spindle. Orthologous to human PYCR3 (pyrroline-5-carboxylate reductase 3).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K00286 proC; pyrroline-5-carboxylate reductase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000029_07997857_08002279.mRNA True 1846 mRNA 0.45 7 7997696 8003097

Neighbor

gene id symbol gene type direction distance location
CI01000029_07933165_07944093 NA coding upstream 53603 7933165 ~ 7944093 (+)
CI01000029_07922221_07926151 NA coding upstream 70160 7922221 ~ 7927536 (+)
CI01000029_07885342_07908699 ARHGAP39 coding upstream 87904 7884282 ~ 7909792 (+)
CI01000029_07672445_07687240 DUSP10 coding upstream 309823 7672445 ~ 7687873 (+)
CI01000029_07653640_07663101 NA coding upstream 334595 7653334 ~ 7663101 (+)
CI01000029_08007965_08016092 EEF1DB, EEF1D coding downstream 3958 8007055 ~ 8016149 (+)
CI01000029_08019292_08036434 NA coding downstream 16195 8019292 ~ 8036758 (+)
CI01000029_08053844_08058278 NA coding downstream 50747 8053844 ~ 8058521 (+)
CI01000029_08072926_08079001 PHACTR1 coding downstream 69829 8072926 ~ 8079112 (+)
CI01000029_08140259_08140582 NA coding downstream 137078 8140175 ~ 8140945 (+)
G155683 NA non-coding upstream 31170 7966287 ~ 7966526 (+)
G155682 NA non-coding upstream 33802 7963682 ~ 7963894 (+)
G155632 NA non-coding upstream 36536 7951604 ~ 7961160 (+)
G155649 NA non-coding upstream 53910 7942756 ~ 7943786 (+)
G155648 NA non-coding upstream 55215 7942267 ~ 7942481 (+)
G155667 NA non-coding downstream 56962 8060059 ~ 8063853 (+)
G155674 NA non-coding downstream 62603 8065700 ~ 8066608 (+)
G155665 NA non-coding downstream 81089 8084186 ~ 8092254 (+)
G155689 NA non-coding downstream 92726 8095823 ~ 8096101 (+)
G155691 NA non-coding downstream 95241 8098338 ~ 8098596 (+)
G155627 NA other upstream 65519 7931480 ~ 7932177 (+)
G155522 NA other upstream 359862 7634833 ~ 7637834 (+)
CI01000029_06906861_06907157 NA other upstream 1090264 6905834 ~ 6908633 (+)
G155083 NA other upstream 1507402 6431535 ~ 6490294 (+)
G155079 NA other upstream 1709298 6282685 ~ 6288398 (+)
G156007 NA other downstream 961721 8964818 ~ 9064541 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location