XLOC_008756 (nlrp16)


Basic Information

Item Value
gene id XLOC_008756
gene name nlrp16
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 41919484 ~ 41931060 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017405
CAACTAACCAGGAAATACCTATGAACTAGTTAAACAAGTTTCAGTCTTGTATGCTTTTGTTATCCTCCCTCACTCCTcgtcatttgctttttaaaatcttttgcgAAAGTTCTCGCAGTCTTTAgttatgaatttttaaaaaaactatctAGCAAACATCATAATGAAAGCTGGAGACGACAATGAAGAAAGAAGAGCTCAGACAAAATCAGGCTCATTTGTTCCCAGTGTTGTGTCCATAAAAAGTGACAAATCGATGAAAACGCCTATTGAGTTACCAAATGGACATGTTCCAGATCAAAGTTTTCGACGGAGAAATAATTCACCTGAACCCAGTGTTTTGTCTCTGAAAAGTGACAAATCAATGAAAACACCAATTGAGATAAAATATAGAGATCCTCCAGGGTATCAAAGACACCATTCACCTGATCCCAGTGCTGTGTCCCTGAAAAGTGACAAATCAATGAAAACACCAATCGAGTTACAAAATGGACATAATCCAGGAGATCAAAGTTTTAGAGAAAGATACAATTCACCTGATCCCAGTGCTGTGTCCCTGAAAAGTGACAAATCAATGAAAATACCAATTGAGTTAAAAATAGGAGATGCTACAGAGAATCAAAGGTATTCACGAACAAAATATTATCAGGATATTCTGACGGCTGACAGCCTTCCTGGAAGATTCATCCATCAACAGGATTCCGAAACCCATAGACAAAAAATCCAAAGATTCAAATcaaacataaaacagaaacatcagTACATTTTTGAAGGATTTGCAAAGCAGAGAAACCCAACACTCCTCAATGAGATTTACATAGATCTCTACATCACAGAGGGTGGGAATGGAGAGATCAGAAATGAACATGAATATAAAAGGATAGAAAAATCTCTGAAGACTGCAGCAACAGCAACAATACCTATAAAATGCAGAGACATCTTTACACCTTTACCTGGACAAGACAAAGCCATCAGAACTGTGCTGACGAAGGGAGTCGCTGGCATCGGAAAAacagtctctgtgcagaagttcatcctGGACTGGGCTGAAGAGAAGGAGAATCAGGACGTCCAGCTCATCTTTCCACTTCCTTTCAGAGAGATCAATCTGATGAAGGACAAAACACTCAGTCTGTTAGATCTTCTTCAGCTCTTTTTCCCTCAAACTAAAGAAATGGAAATATCCAGTGACAAATATAGAGTGATGTTCATTCTTGATGGTTTGGATGAATGTCGGCTTCCCTTAAATTTCAGAAGGAACGAGACTCTGAGGGATGCAAACAAAGAGACATCAGTGGATGTGCTGCTGACGAACCTGATTGTGGGGAATCTGCTTCCCTCTgccctcatctggatcacctccagaccagcagcagcagatctcGTCCCCTCTGAGTGTGTCCATCGAGTGACAGAGGTACGAGGCTTCAATgaccctcagaaggaggaatacttCAGCAAGAGAATCAGTGATCAGAGTCTGGCCAATACAATCATCTCACACCTGAAGTCCTCCAGGAGCCTctacatcatgtgccacatcccagtgttCTGCTGGATCTCAGCCACTGTTCTGGAGAAGATGTTGAGTGAAGCAGAGACTGCAGAGATTCCCAAGACTCTCactcagatgtacacacacttcctGATGGCCCAGATCAACATTAAAGACATGAAGTAtactgaaaaaaaagacaaagacatTATCTTCAAGCTGGGGAAACTGGCGTATGAGCAACTGGAAAGAGGCAATATAATCTTCTATGAGGAAGACCTGAGAGAGTGTGGCATTGATGTGGCAGAAGCTTCAGTTTACTCAGGATTGTGCACTCAGATCTTCAGAGAGGAGTTTGGCTTGTATCAGGAAAAAGTCTTCAGCTTTGTTCATCTGAGCATTCAGGAACATCTAGCGGCTCTATATGTGCACCTCTCCTTCCACAACAATGGTGAAAATGTGCTTGAAGCACAGGAATACAGAAAGCCAGGAACAATGTTGAGCTTACACAAATGTGCAGTTGATAAAACTGTACAAATTTCAAATGGACGTTTTGATCTTTTCCTTCGTTTCCTCATCGGACTTTCACTGCAGTCAAATCACAGCCTCCTAAAAGATCTTTTGGGGAAGAAGCCAGGCAGCTCACTGAAAATAGAACAAACTACCGACTATCTTAAGGAAAAACTCAAATCAATCCCTTGTTCAGAAAGGGCTCTTGTTGTTTtccactgtctgaatgaactcaACGATCATTCTCTCATTACTGAAATACAAAACTACCTGAACGCtggagaaataaaaacagacacttTGTCCCCACACAACTGGTTGGCTCTGGTTTACattttaatgacatcaaatgagAAGTTTGAGGAGTTTCAACTTCAAAAATATGGACGACTGGACGTTGCCTTGCTCTGGCTTCTGCCTGTGATCAAGCTTTCAAAAAGGATTTTGTTGAATGACTGTAATATCACATATAAAGGCTGTGCAATATTGTCTATGGTTCTTTCATCCGAATCCAAtgtgagagagctggacctgagcaACAACAACCTGCAGGACTCAGGAGTAGAAATACTCTGTATCGGCCTGAAGAAATCGGCCAACGCAAAACAACTGCTAAAAGAAGGGTTTGAAAAGAAGAACATTGATCTAGCCTTATTGCTTAAGCAGAACACAAGCTTTGAAGATTATGTATGTCGCACTGCTGGATTACAGGACACAGAGTGTAGATTGGAGTCTCTGAACCTGACCAACTGTGGAGTAACAGAAGAGGGTTGTGTTTTTCTGAGCAAAGCTCTGATTTTAAATGGTACCTATCTGAAAGTGCTGGACCTGAGCTGTAACGCCATTGGAAACTCTGGTGTGAAACACCTTTGTGCTGCTCTGGAGAACGTTCACTGTGCACTAGAAACAATGATATTGGCCAAATGTGGATTGACAGAGGAAAGTTGTGCTGCTCTGGCTTCAGCCCTCAGCTCAAAAACCAATCTGACAAATCTGGATCTGAGTATTAATGATCTACAAGACTCAGGCATGAGGAAGCTCTGTGTGGGACTGCAGAATCCTCACTGTAAACTACAGAAGCTGAGGTTGTCCAACTGTAATGTAACTCACGAAGAACTGAGGGCGCTGACTGAAGCTCTGAAATCAAATCCATCAAAACTGAAAGAGCTCGATCTTCTCGTGAACAATCTGTAGGAGTCAGACTTGAACATGATACTGGACAAATCATCAGacaatgaaaagaaacatctaGCAAGTCCAGATAACAACACTTTGTGTGTGAATTAAGACACACAGTAAcactgtttaattaaaaaaaacatgtaaagaactccattaattgtgtaaatatgagttgcacaaaaataaaaatgctgtaaaaaactTAATTACTCATACACCATTATTGTAATGCCAAGCTGAAAATCCACGAAGCAAGAGAAGTCAAAGCTGGCAATAAGGCTTATCAGAAAAGTAATTCCAGacagtgtgtgtaaatgaatgcAAATGATCTAAATTTAGAATGTAACATATAGTAATGTAACCAGCTTACTCACCCGTGTTTTCTCTTCTTGTTCAGTGCGGAGTTTCTCCATTTGTTTAAATGCTACCACTATACTTGCTTAACAGGAGACATCAATCTGTTATTTTTTACCATCTGTGAAAATAAACGTGACTATTTGTATTATCTTTTGatgcatgttattttacttttcatGTTCAGAAAAAAACTGAAAGTGTTGTACAACTACATAAagcaaacaatacatttaaactaTAAGAATTGTGCATCCTCAGTTACCTGACAAGCGATGATGCTTTGCAAGTGAAATATTTACCTCAAGATTTGTAGGTGAAAATAACTCTGAATTACTTGAACCATGTTGTAGGATGTATGAATGATGTCTGCTTGCAATGACACCTCAAACATGTCCTGCAAGCAACAGATGTAATCAGTATCAGCACTGTATGAGAAAGAAAGCCAATATATTATCA
>TCONS_00017406
CAAGTTTCAGTCTTGTATGCTTTTGTTATCCTCCCTCACTCCTcgtcatttgctttttaaaatcttttgcgAAAGTTCTCGCAGTCTTTAgttatgaatttttaaaaaaactatctAGCAAACATCATAATGAAAGCTGGAGACGACAATGAAGAAAGAAGAGCTCAGACAAAATCAGGCTCATTTGTTCCCAGTGTTGTGTCCATAAAAAGTGACAAATCGATGAAAACGCCTATTGAGTTACCAAATGGACATGTTCCAGATCAAAGACACCATTCACCTGATCCCAGTGCTGTGTCCCTGAAAAGTGACAAATCAATGAAAACACCAATCGAGTTACAAAATGGACATAATCCAGGAGATCAAAGTTTTAGAGAAAGATACAATTCACCTGATCCCAGTGCTGTGTCCCTGAAAAGTGACAAATCAATGAAAATACCAATTGAGTTAAAAATAGGAGATGCTACAGAGAATCAAAGGTATTCACGAACAAAATATTATCAGGATATTCTGACGGCTGACAGCCTTCCTGGAAGATTCATCCATCAACAGGATTCCGAAACCCATAGACAAAAAATCCAAAGATTCAAATcaaacataaaacagaaacatcagTACATTTTTGAAGGATTTGCAAAGCAGAGAAACCCAACACTCCTCAATGAGATTTACATAGATCTCTACATCACAGAGGGTGGGAATGGAGAGATCAGAAATGAACATGAATATAAAAGGATAGAAAAATCTCTGAAGACTGCAGCAACAGCAACAATACCTATAAAATGCAGAGACATCTTTACACCTTTACCTGGACAAGACAAAGCCATCAGAACTGTGCTGACGAAGGGAGTCGCTGGCATCGGAAAAacagtctctgtgcagaagttcatcctGGACTGGGCTGAAGAGAAGGAGAATCAGGACGTCCAGCTCATCTTTCCACTTCCTTTCAGAGAGATCAATCTGATGAAGGACAAAACACTCAGTCTGTTAGATCTTCTTCAGCTCTTTTTCCCTCAAACTAAAGAAATGGAAATATCCAGTGACAAATATAGAGTGATGTTCATTCTTGATGGTTTGGATGAATGTCGGCTTCCCTTAAATTTCAGAAGGAACGAGACTCTGAGGGATGCAAACAAAGAGACATCAGTGGATGTGCTGCTGACGAACCTGATTGTGGGGAATCTGCTTCCCTCTgccctcatctggatcacctccagaccagcagcagcagatctcGTCCCCTCTGAGTGTGTCCATCGAGTGACAGAGGTACGAGGCTTCAATgaccctcagaaggaggaatacttCAGCAAGAGAATCAGTGATCAGAGTCTGGCCAATACAATCATCTCACACCTGAAGTCCTCCAGGAGCCTctacatcatgtgccacatcccagtgttCTGCTGGATCTCAGCCACTGTTCTGGAGAAGATGTTGAGTGAAGCAGAGACTGCAGAGATTCCCAAGACTCTCactcagatgtacacacacttcctGATGGCCCAGATCAACATTAAAGACATGAAGTAtactgaaaaaaaagacaaagacatTATCTTCAAGCTGGGGAAACTGGCGTATGAGCAACTGGAAAGAGGCAATATAATCTTCTATGAGGAAGACCTGAGAGAGTGTGGCATTGATGTGGCAGAAGCTTCAGTTTACTCAGGATTGTGCACTCAGATCTTCAGAGAGGAGTTTGGCTTGTATCAGGAAAAAGTCTTCAGCTTTGTTCATCTGAGCATTCAGGAACATCTAGCGGCTCTATATGTGCACCTCTCCTTCCACAACAATGGTGAAAATGTGCTTGAAGCACAGGAATACAGAAAGCCAGGAACAATGTTGAGCTTACACAAATGTGCAGTTGATAAAACTGTACAAATTTCAAATGGACGTTTTGATCTTTTCCTTCGTTTCCTCATCGGACTTTCACTGCAGTCAAATCACAGCCTCCTAAAAGATCTTTTGGGGAAGAAGCCAGGCAGCTCACTGAAAATAGAACAAACTACCGACTATCTTAAGGAAAAACTCAAATCAATCCCTTGTTCAGAAAGGGCTCTTGTTGTTTtccactgtctgaatgaactcaACGATCATTCTCTCATTACTGAAATACAAAACTACCTGAACGCtggagaaataaaaacagacacttTGTCCCCACACAACTGGTTGGCTCTGGTTTACattttaatgacatcaaatgagAAGTTTGAGGAGTTTCAACTTCAAAAATATGGACGACTGGACGTTGCCTTGCTCTGGCTTCTGCCTGTGATCAAGCTTTCAAAAAGGATTTTGTTGAATGACTGTAATATCACATATAAAGGCTGTGCAATATTGTCTATGGTTCTTTCATCCGAATCCAAtgtgagagagctggacctgagcaACAACAACCTGCAGGACTCAGGAGTAGAAATACTCTGTATCGGCCTGAAGAAATCGGCCAACGCAAAACAACTGCTAAAAGAAGGGTTTGAAAAGAAGAACATTGATCTAGCCTTATTGCTTAAGCAGAACACAAGCTTTGAAGATTATGTATGTCGCACTGCTGGATTACAGGACACAGAGTGTAGATTGGAGTCTCTGAACCTGACCAACTGTGGAGTAACAGAAGAGGGTTGTGTTTTTCTGAGCAAAGCTCTGATTTTAAATGGTACCTATCTGAAAGTGCTGGACCTGAGCTGTAACGCCATTGGAAACTCTGGTGTGAAACACCTTTGTGCTGCTCTGGAGAACGTTCACTGTGCACTAGAAACAATGATATTGGCCAAATGTGGATTGACAGAGGAAAGTTGTGCTGCTCTGGCTTCAGCCCTCAGCTCAAAAACCAATCTGACAAATCTGGATCTGAGTATTAATGATCTACAAGACTCAGGCATGAGGAAGCTCTGTGTGGGACTGCAGAATCCTCACTGTAAACTACAGAAGCTGAGGTTGTCCAACTGTAATGTAACTCACGAAGAACTGAGGGCGCTGACTGAAGCTCTGAAATCAAATCCATCAAAACTGAAAGAGCTCGATCTTCTCGTGAACAATCTGTAGGAGTCAGACTTGAACATGATACTGGACAAATCATCAGacaatgaaaagaaacatctaGCAAGTCCAGATAACAACACTTTGTGTGTGAATTAAGACACACAGTAAcactgtttaattaaaaaaaacatgtaaagaactccattaattgtgtaaatatgagttgcacaaaaataaaaatgctgtaaaaaactTAATTACTCATACACCATTAT

Function

symbol description
nlrp16 Predicted to be involved in intracellular signal transduction. Human ortholog(s) of this gene implicated in several diseases, including CINCA Syndrome; Muckle-Wells syndrome; autosomal dominant nonsyndromic deafness 34; familial cold autoinflammatory syndrome (multiple); and gestational trophoblastic neoplasm. Orthologous to several human genes including NLRP13 (NLR family pyrin domain containing 13); NLRP14 (NLR family pyrin domain containing 14); and NLRP2 (NLR family pyrin domain containing 2).

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-8582 Predicted to be involved in intracellular signal transduction. Human ortholog(s) of this gene implicated in several diseases, including CINCA Syndrome; Muckle-Wells syndrome; autosomal dominant nonsyndromic deafness 34; familial cold autoinflammatory syndrome (multiple); and gestational trophoblastic neoplasm. Orthologous to several human genes including NLRP13 (NLR family pyrin domain containing 13); NLRP14 (NLR family pyrin domain containing 14); and NLRP2 (NLR family pyrin domain containing 2).

Ensembl:

ensembl_id ENSDARG00000077673

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017405 False 4000 mRNA 0.40 12 41919484 41931060
TCONS_00017406 True 3266 mRNA 0.41 11 41919518 41930471

Neighbor

gene id symbol gene type direction distance location
XLOC_008755 si:ch211-191a16.5 coding upstream 3565 41901710 ~ 41915919 (+)
XLOC_008754 pxylp1 coding upstream 73775 41815703 ~ 41845709 (+)
XLOC_008753 NA coding upstream 172551 41722253 ~ 41746933 (+)
XLOC_008752 NA coding upstream 174446 41713770 ~ 41745038 (+)
XLOC_008751 CLSTN2 coding upstream 255286 41555593 ~ 41664198 (+)
XLOC_008757 si:ch211-191a16.2 coding downstream 1009 41932069 ~ 41945506 (+)
XLOC_008758 CR925728.3 coding downstream 159710 42090770 ~ 42091109 (+)
XLOC_008759 NA coding downstream 221738 42152798 ~ 42202266 (+)
XLOC_008760 NA coding downstream 288523 42219583 ~ 42225721 (+)
XLOC_008761 NA coding downstream 299028 42230088 ~ 42231230 (+)
XLOC_008463 BX663520.1 misc upstream 20667202 21252191 ~ 21252282 (+)
XLOC_008750 NA non-coding upstream 371866 41545063 ~ 41547618 (+)
XLOC_008749 NA non-coding upstream 391548 41461303 ~ 41527936 (+)
XLOC_008748 NA non-coding upstream 630175 41288125 ~ 41289309 (+)
XLOC_008763 BX322538.2 non-coding downstream 331641 42262701 ~ 42280759 (+)

Expression


Co-expression Network