G154564


Basic Information

Item Value
gene id G154564
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 5453310 ~ 5454135 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU175488
TGAGCAGCAAATCATCATATTAGAATGATTTCTGAAGGATCATGTGACACTGAAGACTGGAGTAATGATGCTGAAAATTCAGCTTTGATCACAGGAATAAATTACATTTTAACATATACTCAAATAGAAAACAGTTATTTTAAATTGTAATAATATTTCACAATATTACTGTTTTTACTGTATTTTTGATGAAATAAATGCAGCCTTGGTGAGCAGAAGAGACTTTCAGAAACAATAAAAAAAACTCTTACAAACCCCAAACTTTTGAACAGTAATGTATATTAAAATTATTTGATATGATCTGGTCTTAATTTTACAAACATAGAAACTATATGCTATATATTTGTAAATCACTTTGGTTAAAAGCGTCTGCCAAATTAATAAATATAAATACAAATATGCTATTTTGTGAACTATATTTACATTTTCTGAAGGAAACGAGTGGCTCTAGCCGTACAAAACATGCCAGCAGAATGCTGCGGTTGGTCTGATAACTTTCTTAGTATTTAAACCATTGCTAAGGTGTTCAGAGTGGTTGCTAGGGTGTTGCTAGGCATCTGGCCCAAATCAAAAGGGCTCAACCCAAAGTCTATAATATATTCTGAAGACTATGGGATTTTCTTAGCCATTTTATCAGTCTTATCACTTAGCAGAAATGTCCTCTTCTGAATTGAGCGGTTTAATTGTAAGTATGATCAATACTAATGGTGATGCTTACATTAGCAAACATGATTAAAACATTTCTGTCTCATCCTTCACAGCCGCTGTATATATAAATTTAGAAATTCCAGCAGTTCACAGAGGGTTTCGTTCGCTGAGGAAAACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU175488 True 826 lncRNA 0.33 1 5453310 5454135

Neighbor

gene id symbol gene type direction distance location
CI01000029_05444811_05447063 NA coding upstream 5646 5443358 ~ 5447664 (+)
CI01000029_05433797_05436469 NA coding upstream 16816 5433645 ~ 5436494 (+)
CI01000029_05402102_05409884 ZC3H14 coding upstream 43313 5402102 ~ 5409997 (+)
CI01000029_05390624_05394576 RAD51.S, RAD51.L, RAD51 coding upstream 58414 5390624 ~ 5394896 (+)
CI01000029_05380959_05388911 NA coding upstream 64130 5380959 ~ 5389180 (+)
CI01000029_05461497_05468985 BATF coding downstream 7362 5461497 ~ 5470346 (+)
CI01000029_05474130_05494930 ADCY3 coding downstream 19628 5473763 ~ 5495219 (+)
CI01000029_05496375_05508658 WDR26, WDR26B, WDR26.S coding downstream 42240 5496375 ~ 5508746 (+)
CI01000029_05512755_05521332 FEZ2 coding downstream 58620 5512755 ~ 5521332 (+)
CI01000029_05521742_05525648 FEZ2 coding downstream 67607 5521742 ~ 5525932 (+)
G154536 NA non-coding upstream 2019 5448056 ~ 5451291 (+)
G154620 NA non-coding upstream 25438 5427662 ~ 5427872 (+)
G154511 NA non-coding upstream 29090 5420112 ~ 5424220 (+)
G154560 NA non-coding upstream 94707 5358155 ~ 5358603 (+)
G154586 NA non-coding upstream 182930 5270132 ~ 5270380 (+)
G154572 NA non-coding downstream 116967 5571102 ~ 5571475 (+)
G154674 NA non-coding downstream 256974 5711109 ~ 5711373 (+)
G154675 NA non-coding downstream 266153 5720288 ~ 5721868 (+)
CI01000029_05772821_05785145 NA non-coding downstream 331227 5772821 ~ 5785381 (+)
G154900 NA non-coding downstream 403574 5857709 ~ 5858056 (+)
G154587 NA other upstream 181775 5271020 ~ 5271535 (+)
G153790 NA other upstream 713203 4733589 ~ 4740107 (+)
G153475 NA other upstream 1891306 3545125 ~ 3562004 (+)
G152451 NA other upstream 2690371 2761594 ~ 2762939 (+)
CI01000029_01526863_01527414 NA other upstream 3925411 1526754 ~ 1527899 (+)
G155079 NA other downstream 828550 6282685 ~ 6288398 (+)
G155083 NA other downstream 977400 6431535 ~ 6490294 (+)
CI01000029_06906861_06907157 NA other downstream 1452053 6905834 ~ 6908633 (+)
G155522 NA other downstream 2180698 7634833 ~ 7637834 (+)

Expression


Co-expression Network