G155087


Basic Information

Item Value
gene id G155087
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 6323091 ~ 6334951 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU176104
CTAAAGCTGCCCGTAACCTCCGCTCGTCCACAAACGGTAACAAAGCAACACCCTGCCAGGCGTACTTCTTCCCATTCAAATCAATGGCAAAGTCATCGGGGTAGAAATCAATGATTGAGGATTCTGGGTCCGTCATCAGGGCTCTCCATGTCGTCGGCAGGAAGTTTCCACTGGCAGCAGGAAATACACTCATGAGCTGCTCCAAAGGTTTGAACGGTTTGGTCCCTTTCTCGAAATCACTGAACATGCCCTTGATGTCTTTGAAGTCGGAGGCAAACGGAGCATAATGAAAGGGAAAATACCACTTCCAGGATGCGCAGCCCTGATAGTAGTACCTGAGCACCCAGCACAGGCCCTCCACGTAAGACTTCACCACTTTCTTACGAAACTCATCGTCCGTCGCATCCACATCAAATTTGGTTTTATAGTAACGCTGTTTCCAGCCGTCCTCCCATAACCTGACATTATCTTCCGGTTCTGGTTCGCTGTCACTGTCCTCTGCTTTACGTTTCACACCACGAGTCTCCATGTTGTCACTGGCTCCAGCAGCACCCTTTCCATTTTTGATCATGGCTCTCAAGGACTGAGCTGCTTCCTGATTGCGCTGGTTGCCCTGCATCCTCATTTCATATGCGGAATGTCTGGCGTTCTGCACTACCATGGGTCCGTCTCTGCCGCCCAGGGCCCGAGGGGCAAACTGACCACCAGGGATAAACGATGGACCCTGCTGCGCTTTCATCCGCTTCTTCTTTTCCTTCATTCTCCGCTTAAAACTCTCATCGTCGTCTTTGCGCTTTTTGAAGATGTTGTCCTCGGCCACCCCTACAGCTTGCATAATGAGCTCCACACGCTC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU176104 True 853 lncRNA 0.51 10 6323091 6334951

Neighbor

gene id symbol gene type direction distance location
CI01000029_06305668_06307332 NKX2.4B coding upstream 15416 6305245 ~ 6307675 (+)
CI01000029_06294088_06295613 NA coding upstream 27065 6293019 ~ 6296026 (+)
CI01000029_06214396_06222690 NA coding upstream 100356 6212878 ~ 6222735 (+)
CI01000029_06086495_06092753 NA coding upstream 229232 6086495 ~ 6093859 (+)
CI01000029_06076254_06083211 XKR5 coding upstream 238880 6076121 ~ 6084211 (+)
CI01000029_06347167_06348123 NA coding downstream 11709 6346660 ~ 6348169 (+)
CI01000029_06443365_06447942 CRNKL1 coding downstream 108414 6443365 ~ 6447942 (+)
CI01000029_06453008_06476863 NA coding downstream 118057 6453008 ~ 6477090 (+)
CI01000029_06494856_06495812 NA coding downstream 159440 6494391 ~ 6495847 (+)
CI01000029_06724205_06734079 HMBOX1B, HMBOX1 coding downstream 389254 6724205 ~ 6735582 (+)
G155072 NA non-coding upstream 60617 6262175 ~ 6262474 (+)
G155061 NA non-coding upstream 76448 6246338 ~ 6246643 (+)
G155060 NA non-coding upstream 77116 6245683 ~ 6245975 (+)
G155041 NA non-coding upstream 159174 6163680 ~ 6163917 (+)
G155032 NA non-coding upstream 159699 6162651 ~ 6163392 (+)
G155110 NA non-coding downstream 7597 6342548 ~ 6342771 (+)
G155121 NA non-coding downstream 46516 6381467 ~ 6381786 (+)
G155124 NA non-coding downstream 49813 6384764 ~ 6385040 (+)
G155128 NA non-coding downstream 56825 6391776 ~ 6391993 (+)
G155142 NA non-coding downstream 96997 6431948 ~ 6432805 (+)
G155079 NA other upstream 34693 6282685 ~ 6288398 (+)
CI01000029_05461497_05468985 BATF other upstream 852745 5461497 ~ 5470346 (+)
G154587 NA other upstream 1051556 5271020 ~ 5271535 (+)
G153790 NA other upstream 1582984 4733589 ~ 4740107 (+)
G153475 NA other upstream 2761087 3545125 ~ 3562004 (+)
G155083 NA other downstream 96584 6431535 ~ 6490294 (+)
CI01000029_06906861_06907157 NA other downstream 571237 6905834 ~ 6908633 (+)
G155522 NA other downstream 1299882 7634833 ~ 7637834 (+)
G155627 NA other downstream 1596529 7931480 ~ 7932177 (+)
G156007 NA other downstream 2629867 8964818 ~ 9064541 (+)

Expression


Co-expression Network