G155649


Basic Information

Item Value
gene id G155649
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 7942756 ~ 7943786 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU176729
GTTGAATATAACAAAAGAGGAAACAAAACTAGACAGCTGTCTAAAGCCGGGTGCAACAAAGACATCTCTAGTGTTAATTTTGATCACGGCTTATCTTGAAAAACGAAGACAATTTGACAATTGTCGTAGGAGAAGTCACGTTGCAGGACTGTGCGCCAAATCTTCGGACACTCTCAGAATTTCGTCGGAGGTAAAATTTGATCGCAACGGTCATTAATCGGCTGTCGTGGTTCAGGTCACGCCCTGTGGCAGTTCATCTATTGTGTGGATCTGGTTTGTTTGTTTCTGTGGGTTTCTCTTTGTCTTTGTTTCTTTCAAAAAAAGTAGTACTTGAATGACAGAGTTTTCCTTTTGGTATGATCTATCTATATTATGATCACTATTATTATGACACTAGTAAATCAGACACTCAGCTCTCTTAAGAGCTTCGGTGTTTACTAAATGTTCTTCAACAGTAGTCAAAAGCACAGTCATTATAGGTGCTTTCTTTTTTCCAGCCAAGTGATTGGTTCATGGCTAATTATGACATCACCCGTAAATGAAAATCTTCACATCTCATTGGTTGTGAGAGTCTGAACACTGTTCAATGCTGCAAACCAATGACTGATCAAACACTTTGAACAACCCTTAAGTTGAAAAAGACAAAATCATTAGCTCTTAGCTCTCTTTTTATGTTTATTTCAAGTTTTTCTTAAAAATAAACATTTAATTTGTGCTCTGTCCTGTTTGGTGCGCTTCTGTTTTTACTGGTCTGTCAATCAGGGTTTATTTTCTGATGATCTGTACTGTATATTTTAATAATATACACTCATGTTTAAAATAGCCTAATGCAGAATTTTAGGGATATTTTAAGGGTTCCCAAATTGTGCTACATCTCTAGAAAATTTGCAGTTTTCATTTCATTTTTAGCTTGTTTCCAGATGATTTTTATTCAAAACCATGTCATTAAGATAAGTGTGATTTAAGCAAGAGGGGTGTCCAACCCTGCTCATGGAGAGCTACTGTCCTACAGACTTCAGTTCCAACCCTGC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU176729 True 1031 lncRNA 0.37 1 7942756 7943786

Neighbor

gene id symbol gene type direction distance location
CI01000029_07922221_07926151 NA coding upstream 15220 7922221 ~ 7927536 (+)
CI01000029_07885342_07908699 ARHGAP39 coding upstream 32964 7884282 ~ 7909792 (+)
CI01000029_07672445_07687240 DUSP10 coding upstream 254883 7672445 ~ 7687873 (+)
CI01000029_07653640_07663101 NA coding upstream 279655 7653334 ~ 7663101 (+)
CI01000029_07643406_07651059 NA coding upstream 291375 7643406 ~ 7651381 (+)
CI01000029_07997857_08002279 PYCRL coding downstream 53910 7997696 ~ 8003097 (+)
CI01000029_08007965_08016092 EEF1DB, EEF1D coding downstream 63269 8007055 ~ 8016149 (+)
CI01000029_08019292_08036434 NA coding downstream 75506 8019292 ~ 8036758 (+)
CI01000029_08053844_08058278 NA coding downstream 110058 8053844 ~ 8058521 (+)
CI01000029_08072926_08079001 PHACTR1 coding downstream 129140 8072926 ~ 8079112 (+)
G155648 NA non-coding upstream 275 7942267 ~ 7942481 (+)
G155647 NA non-coding upstream 907 7941644 ~ 7941849 (+)
G155646 NA non-coding upstream 1391 7940887 ~ 7941365 (+)
G155645 NA non-coding upstream 1957 7939547 ~ 7940799 (+)
G155644 NA non-coding upstream 5835 7936629 ~ 7936921 (+)
G155632 NA non-coding downstream 7818 7951604 ~ 7961160 (+)
G155682 NA non-coding downstream 19896 7963682 ~ 7963894 (+)
G155683 NA non-coding downstream 22501 7966287 ~ 7966526 (+)
G155662 NA non-coding downstream 25718 7969504 ~ 8047016 (+)
G155667 NA non-coding downstream 116273 8060059 ~ 8063853 (+)
G155627 NA other upstream 10579 7931480 ~ 7932177 (+)
G155522 NA other upstream 304922 7634833 ~ 7637834 (+)
CI01000029_06906861_06907157 NA other upstream 1035324 6905834 ~ 6908633 (+)
G155083 NA other upstream 1452462 6431535 ~ 6490294 (+)
G155079 NA other upstream 1654358 6282685 ~ 6288398 (+)
G156007 NA other downstream 1021032 8964818 ~ 9064541 (+)

Expression


Co-expression Network