CI01000030_08047726_08057237 (STAB1)


Basic Information

Item Value
gene id CI01000030_08047726_08057237
gene name STAB1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 8047726 ~ 8057237 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000030_08047726_08057237.mRNA
CGTGTAACTGCACCAGCAATGGCAAGTGTGACAGCGGCCTGGACGGTGATGGCAGCTGTTTCTGTCAAGAGGGGTGGACGGGTAAATACTGCGAATCAAAAATCGAAGTCAAGCCGATCTGCTCTCCTGCATGTGATCTCAACGCAGTGTGTCTCCCTCAAAATCAGTGCGAATGTGTGCCACCCTATGGAGGAAATGGTATCAACTGCACGGCCCCGGATCTTTGCAGTGAATATAACGGAGGCTGCGACGAAGAAGCAGACTGTTTGCAGACCGGTATCAATGTTAACTGTTCCTGTCGTACCGGATACTCTGGAGACGGACACATCTGCTTGCCCATCAACCGATGTGTAGAGGAGGTGAACGGTGGCTGCAGCGATTTCGCAGAATGCATTGTCACCGGACCTAATGAGAGGCACTGCGAATGTCTCACGGGGTATGTGGGAAACGGAATCCAGTGCTTGGAGAAAGTGGTGCCCCCTGTTGACCGCTGTCTGGAGGACAACGGTGGCTGCGACCCCAAAGCGATGTGCAAAGACCTTCATTTCCATGCGAAAACGGCGGGCGTTTTCCACCTGCGCTCATCTGAGGGGAAGTATAAACTGAATTTCAGCCAAGCACAGGAAGCTTGTAAGGCAGAGGGAGCCACACTTGCTACATTCTCGCAGCTCTCTGATGCGCAGCAGTTGGGAATGCATCTATGTGTGGCAGGATGGATGGACGGGAATAAAGCGGGCTATCCGATCCGGTTTCCTTCTGCTAAATGTGGTGACAATCATGTCGGTATTGTGTTGTACAAAGAGCCAGTCAACACCAGTTGGCCATACGATGCGTACTGCTACAGGATGAATGAGGTGTCTTGTGAATGTGGACCTGGATACATTGGAAGCGGGGAATTCTGTAATGGAGACTTGGCCTCAGTTGTTGCCACCACTTCCAATTTTTCAGTGTTTTACACAGCTTTACTGAAGTATGCTGAAGATGGAGAGGAGGGCAAGAACCTGCTGAAGTCCTTGTCCGACAAATCATTAAACTTTACAGTTTTTGTACCTCATAATGGCGGTTTCTCTGCAAACAAGACTTTATCATGGAGGGATTTGCAGTATCATATATCCATCATCAATAGCCTTCACTACTACAAGGACTTGAAGCACAACACAGTTATCCCGTCTCGTCTGGGCTCCGACCTCGTTGTAACAATTCCCTCTAATTCCAGCAGTCAGTATGAGGACTCTCAACCCCAAAAACTGGTGAATAAGAAGGTTATATTGGACTGGAACATTCCAGCCATCAATGGTCTGATCCATGTCATTGATGGGCCTTTGAGAGCTCCACCTGTTCCAGTGCCAGCAGTCCTTCCAATCTCACAGTCCAGTGGTGTCGCAGTGACCACTGTGCTGATCGTCATTGCCATTGTTGGTATTGTCGCCGGGCTCGCATACTACGTCCTCAAGCACAAGAATGATGCCTTTCGCTTCCAGTATTTCAAG

Function

symbol description
stab1 Predicted to enable calcium ion binding activity and hyaluronic acid binding activity. Acts upstream of or within positive regulation of lymphangiogenesis. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including axis; brain; pharynx; post-vent region; and vasculature. Orthologous to human STAB1 (stabilin 1).

GO:

id name namespace
GO:0005540 hyaluronic acid binding molecular_function

KEGG:

id description
K19020 STAB1; stabilin-1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000030_08047726_08057237.mRNA True 1490 mRNA 0.50 11 8047726 8057237

Neighbor

gene id symbol gene type direction distance location
CI01000030_07990330_08009606 NISCH coding upstream 37571 7990330 ~ 8010155 (+)
CI01000030_07968740_07975571 NOL8 coding upstream 72005 7968676 ~ 7975721 (+)
CI01000030_07967106_07968408 NOL8 coding upstream 79142 7967106 ~ 7968584 (+)
CI01000030_07954583_07955459 NA coding upstream 91252 7954583 ~ 7956474 (+)
CI01000030_07924704_07945878 ECM2, OMD coding upstream 101787 7924704 ~ 7945939 (+)
CI01000030_08133065_08140755 RBCK1 coding downstream 75828 8133065 ~ 8140998 (+)
CI01000030_08150901_08154024 GM7936 coding downstream 93664 8150901 ~ 8154024 (+)
CI01000030_08155452_08158318 RDH5 coding downstream 98215 8155452 ~ 8158709 (+)
CI01000030_08159242_08166884 GLS2B coding downstream 102005 8159242 ~ 8166945 (+)
CI01000030_08168074_08174577 NA coding downstream 110690 8167927 ~ 8174662 (+)
G162015 NA non-coding upstream 58551 7988580 ~ 7989175 (+)
G161974 NA non-coding upstream 59577 7986556 ~ 7988149 (+)
G161954 NA non-coding upstream 174538 7859914 ~ 7873188 (+)
G161956 NA non-coding upstream 186038 7861182 ~ 7861688 (+)
G161953 NA non-coding upstream 189463 7855627 ~ 7858263 (+)
G162074 NA non-coding downstream 130143 8187380 ~ 8187595 (+)
G162080 NA non-coding downstream 140507 8197744 ~ 8198028 (+)
G162087 NA non-coding downstream 180101 8237338 ~ 8237683 (+)
CI01000030_07868597_07886123 NA other upstream 174954 7868292 ~ 7886228 (+)
CI01000030_07200104_07202258 GCGA other upstream 845241 7200104 ~ 7202485 (+)
G159816 NA other upstream 3530619 4516778 ~ 4517381 (+)
G159685 NA other upstream 3559200 4431800 ~ 4488526 (+)
CI01000030_03018776_03042194 FGF22 other upstream 5003953 3018776 ~ 3043773 (+)
G162088 NA other downstream 180728 8237965 ~ 8239604 (+)
G161986 NA other downstream 487345 8544582 ~ 8548325 (+)
G162137 NA other downstream 510773 8568010 ~ 8571726 (+)
G162449 NA other downstream 1299166 9356403 ~ 9357014 (+)
CI01000030_10039688_10047019 NA other downstream 1985556 10039358 ~ 10047210 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_020920 stab1 coding NC_007133.7 CM002906.2 10281420 ~ 10354381 (-)