XLOC_008892 (im:7143333)


Basic Information

Item Value
gene id XLOC_008892
gene name im:7143333
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 742198 ~ 745672 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017575
agtgacgtcatcaggcggcggcGCACTCCTGTTTGTTGTGAATCTACTCGAGAAAGAACAGCAGAttattataaagatggcgtttattaaagaggagagtgaagacatcaagattgaagaaacattcacagtcaaacaggaagacattgaagatattttgagagtgaaacatgaagagattgaagaaacatttacAGTCAAAAAAGAAGACCCTGAGGAACAgacagaCCCGATGCCATTCAAAGAGGAGAGTCTAGATCAGAATGAAGTAGAAGAGAAGGATCTTTATGAAGGATGTCGTGACTTGAATCGGAACAGTCGAACACCCCCTCCTCATGGAAAAAGAGCCCAGAAAGCTAAACCCTACACCTGCCATCTCTGCGGGAAAAGTTTCACGCGGAAAAAGATCGTTACAGACCACATGAGGCTTCACACTGGAGAACGGTTTTACGATTGTCAACATTGCGAAAAGAGTTTCGCTTGGGAACAAAACTTTAGgcaccacatgaggattcacactggacgAAAACCTTACgtctgccaacagtgtggaaagagtttcacttgGAAACAAAACCTTAGAGAGCAtgtgatga

Function

symbol description
im:7143333 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription, DNA-templated.

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041111-186 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription, DNA-templated.

Ensembl:

ensembl_id ENSDARG00000096948

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017575 True 596 mRNA 0.43 3 742198 745672

Neighbor

gene id symbol gene type direction distance location
XLOC_008891 si:dkey-7i4.19 coding downstream 2969 736522 ~ 739229 (-)
XLOC_008889 zgc:174574 coding downstream 37733 685007 ~ 704465 (-)
XLOC_008888 zgc:171901 coding downstream 57287 672984 ~ 684911 (-)
XLOC_008887 si:ch211-210b2.2 coding downstream 72722 665156 ~ 669476 (-)
XLOC_008886 si:ch211-210b2.4 coding downstream 81804 647854 ~ 660394 (-)
XLOC_008893 NA coding upstream 67424 813096 ~ 815019 (-)
XLOC_008894 NA coding upstream 72519 818191 ~ 848462 (-)
XLOC_008895 NA coding upstream 91343 837015 ~ 848792 (-)
XLOC_008896 NA coding upstream 124289 869961 ~ 909037 (-)
XLOC_008897 NA coding upstream 129656 875328 ~ 875985 (-)
XLOC_008885 NA non-coding downstream 108790 622709 ~ 633408 (-)
XLOC_008874 NA non-coding downstream 312551 428419 ~ 429647 (-)
XLOC_008873 CABZ01056628.1 non-coding downstream 316442 425695 ~ 425756 (-)
XLOC_008871 NA non-coding downstream 364011 374380 ~ 378187 (-)
XLOC_008870 FP102887.1 non-coding downstream 392631 349451 ~ 349567 (-)

Expression


Co-expression Network