XLOC_008900 (si:dkey-77f5.14)


Basic Information

Item Value
gene id XLOC_008900
gene name si:dkey-77f5.14
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 920298 ~ 923981 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017581
gtttgattagggttggagctaaaatctgcaggacaccggacctccagcaTTGAGTTAATAAAGGTCACtaaacacgttttttttttttttttttacatcagttgTGTCTGAGATATGAGTCACTGTATGACTATTAAAGGTGTTTCAGTACAGTAGCCACTCAGCATAGTATGCAAAGTCATTGCAAGCAGCATAGGCTTTATAAGAATTACTTTGGAATGTAACAaatatgtcttaaaataaaagtgtgCAAATGATATTTTCaaatatgataattatataataaattatattattattgttaatgtaaTTATGCGATTCAGCTTTTAAAAACATCTACTTTCGACGCGCCTCTATGACGTAATTGGCGTCGGCGAGAGGAGGAATGACGTCATAATAACGCGCCGCTCCTGTATATTTTGTTGTACGGCCGGtgaaaggtttgtgtttttaagcctttaaaagtgtttaaacTTAATGACAAGGTTCTGGCGTTTTGTGGTTTAACGAGCGCTGCACAGTGGGTTAATTATTACCGAGAGAATTACGACAATACATTTATCTAACAGTAATAAACGCGAGTTCAATGAGTGAAGCTCATAACAGAAGCCGCGTCTGTTTCTCTTCATCAACAGCAGGAGTCCAGCCTGACAGTGAAGGAGACACTGATTATACAAACACTGATGAACTAAAACACCTTTAATAATCATACAGTGGATCATATCGCAGACACAACTGATGTACAAAAACGTTTGTAGTGACCTTTATTACACAGCAATAACACACGATTcagtaaaaatgcaaataaaacacaaataaggaAAAGCTAAACATAATAGAGAAAATGTGAAGCATGATTTCTCTAATTGTGAAACACAGCCAGacatttagtgtttatttttctCTATTAATGCAGTCTTCATCTTGATCTTGACAGAGTGTACAAACCCGCAGAAAGCAGAGTATTAtgaagatggcgtttattaaagaggagagtgaagatgtggaCATTGAAGAAGCTTTCAGAGTCAAGCATGAAGATCCTGAGGAACAgacagGTGTGATGGCAATCAAAGAGGAGAATGAAGAGTTGAATGTAATGATGGAGAAAGATCAGCTTGAGAAACATGACTTTGTGTCACTTGGAAACTCCATCAAGACTGAAACCTCCTCATCTGTGGAAACACTTGAGGAGACCGAATCTAAGGGGCAGTTCACATGCCTGCAATGTGGAAAAAGATTCGGTCAACATTGTAAGCTCACTTACCACATGAAGATTCACTccggagagaagccgtacacCTGTGAGCAGTGCGCAAAGACTTTCAAGTACAAAGGAAACCTTAAATTCCACATGAAagtccacaccggagagaagcctttcaAATGTGAGAAGTGTGGAAAGCGGTTCGTTCACAAAGGAAACCTGGAGTACCACATGAtcgttcacactggagagaggcctttCCCCTGCAGCGTGTGTGGAAAGAGGTTTGTTCACAGAGGAAACCTTAATCACCACATCagagttcacaccggagagaggCCTTTTACCTGCACACACTGCGGGAAGAGCTTCGCTCAGAACGCCACTCTTAAGACTCACACACtggttcacaccggagagaagcctttcaCATGTCTTCAGTGTCAGAGCAGTTTCACGTACAGAAGAGACCTGAAGTATCACATGCAGAAGTGCTGCGCTAAGACATTGCAGTGCATTAAGAGCGAGGACAGCCTTGAAAACGGCAGCACTCATCAACACTTCAACTCTGGATGAAGTTAATTTGTAATTAGCGTATTGACGATGTGTAGCTTGCACACTGTAGATACAAAGTGATGCAGATGTGAACCCAAACTCTTATTCTTTATGTGGTGGTGTCTCTCCTGATGGTAGTTTGTCTAGGGGTGTCcatactcagtcctggagggccggtgtcctggatattttagttc

Function

symbol description
si:dkey-77f5.14 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000098027

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017581 True 1959 mRNA 0.41 2 920298 923981

Neighbor

gene id symbol gene type direction distance location
XLOC_008896 NA coding downstream 11261 869961 ~ 909037 (-)
XLOC_008898 NA coding downstream 11991 877204 ~ 908307 (-)
XLOC_008899 NA coding downstream 19419 899089 ~ 900879 (-)
XLOC_008897 NA coding downstream 44313 875328 ~ 875985 (-)
XLOC_008895 NA coding downstream 71506 837015 ~ 848792 (-)
XLOC_008901 alox5b.1 coding upstream 18550 942531 ~ 952891 (-)
XLOC_008902 NA coding upstream 62163 986144 ~ 993587 (-)
XLOC_008903 NA coding upstream 83619 1007600 ~ 1008359 (-)
XLOC_008904 znf1010 coding upstream 93456 1017437 ~ 1022436 (-)
XLOC_008905 si:dkey-77f5.4 coding upstream 101327 1025308 ~ 1031511 (-)
XLOC_008908 NA non-coding upstream 216464 1140445 ~ 1143069 (-)
XLOC_008910 LO017713.1 non-coding upstream 397809 1321790 ~ 1321906 (-)
XLOC_008927 AL954387.2 non-coding upstream 1341988 2265969 ~ 2266083 (-)

Expression


Co-expression Network