XLOC_008901 (alox5b.1)


Basic Information

Item Value
gene id XLOC_008901
gene name alox5b.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 942531 ~ 952891 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017586
ATTATCAGACACACCACTGCATGAACATGACAGTAGCTCAGTCTCAAGGCGATGCTGATGGGAACTGTTAGAATTGTTTAATGGTAGCACAATATCTCTGAGGAAACCTCACAACAGGATTGAAGCATATTCAGAGGCAGCATCTGAAGTCTGAGCTGCAGCAGAATGTTCACGTACACAGTGTCTGTTGTGACTGGAAATCAGGTGTTTGCTGGGACTTTGAACTACATTTACCTGACGCTGGTGGGTGAAGAGAGAAGCAGCGACCGAACTCTGCTGGACAAATCCTGGTTTGAACGTTTGGACAGAGGAAAGGTGGTCTCCATTGACATCCATGTGGAGGAGACTCTTGGAGAGCTTCTGCTGGTCAAACTGGAGAAGGAGAAGTTCCTGATCAATGATGATTGGTACTGCAGGAGCATCAGTGTAACGGCACCCGCTGGAGACTGCTTTGAGTTCCCCTGTTATCGGTGGATAGCTGATCAAAAGGAGCTGGTTCTTCCAGAAGGACGGGGTCGATTGCCTCAAGATGAAAAGCTCTCAATAGTGAAAGAGTGCAGGCACCTGGAACTggaaaacagacaaaaacatttCAGGTGGAAAGAATGGAAACCCGGTTTCCCAATGTCTATTGATGTCAATGGATCCTCTGAACTTCCTTTGGACGTTAAGTTTGATACCGAAAAAGTAGTGGACTTCAAATTGCATTTCCTGAAAGGGATTGGAAATGTTGGTCTTAATAAATGTAAGGGTTATTACCAGTCTTGGAAAGACTTTGCAGATTTTGAAAAAGTGTTCATAACCATTGAGAACACAGTGTCAGAGCATTTGATGCAGAGGTGGAAGGAGGATGCAGTGTTCGGTTATCAGTTCCTAAATGGCTGCAATCCTGTGATGATCAAAAAGTGCACAGAACTTCCAGGGAAGTTTGTGGTCACGCAGGAGATGGTGAGGAACTCCCTGGATAAAGGAACAACTCTGCAGGATGAATTACAGGCAGGAAACATCTACATAGCAGACTATGAAATACTGGAGGACGTGCAACCCAATGACACAGACCCCAGCACCCAGCAGTATTTGGCCGCCCCCTTCTGCCTGTTTTACAAGAACGGACAAAATAAATTCATACCAATCGCTATTCAGCTCAGTCGTGAGGCCACTCCAGGACAGATGAACACAGTCTTTCTTCCCAGCGATAATCACTACGACTGGTTGTTAGCCAAGATGTGGGTGAAATCCTGCGACTTCAACGTACACCAGCTGGTCACACACCTTCTCAGAACACACCTGATATCTGAGGTGTTTGCCATAGCCATGTTCAGACAGCTCTCTGCTGTCCATCCTGTGTACAAGTTACTGATCCCTCATGTCCGTTTCACCATTGCCATCAACACTGCAGCACGTGAAAAACTCATCAATGACACTGGGGTCTTTAATGAGGCTAATAGCAGTGGAGGGATTGGACTTCAGCAAGTGATCCAAAAGGCCATGCAGACATTAACCTACAAGTCTCTGTGCTTCCCTGAGGCCATGAAAACTCGAGGAGTTGACAACCAGGAAGATCTgcccaactactactacagagaTGATGGCATGCTGGTCTGGGAGGCAGTGAAAAGCTTTGTCTCTGATGTGGTCAAGATCTACTATAGTAGTGATGAGACCGTTCAGGGAGATGAGGAGATCCAGGCTTTTGTTCAGGATGTTTGCTCCTCTGGTATGAAGAATTGTCCCAAGAACGGTGAGTTTCCAAGTGCCCTAAAAACCCAGGAGCAGCTGGTTGAGTATCTGACCGTGGTGATTTTCACAGCTTCAGCACAACATGCAGCAGTCAACTTTGGACAGTTTGACTGGTTTGCTTGGGTCCCGAACACTCCGTCCACCATGCGGAAACCTCCACCCACAGAGAAGGGCAAAGTGGATATGAAGTACATCATGGAGAGTCTGCCGGACCGCCAACGCTCCAGTTGGCATATAGGAGCAGTTTGGGCCCTCAGTCAGTTCCAGGACAGTGAGGCGAATACCCTGATAAGTATTTCACTGAAAAACTGGTCACTGAAGCAATTGAGAATTTCCGCAAGGAATTATTTGTCATCACTAAGATCATCAGAAAGAGAAATGAAACTCTGGAGCTGCCCTACTTGTATCTGTGTCCAGACAGGATCCCCAACAGCGTGGCCATCTGAAGAAAACATCTGTGGCGAACATCTTCAAAAGCTGCTCACAGTTCATTTACACAGTATTTGCttagcactttaaaaaaaaggcaGCAAAAAAC
>TCONS_00017587
atgattagaaatgtgttgaaatctgctctctgttgtAAAAAAACTTCTCCTTTACAGGCAGGAAACATCTACATAGCAGACTATGAAATACTGGAGGACGTGCAACCCAATGACACAGACCCCAGCACCCAGCAGTATTTGGCCGCCCCCTTCTGCCTGTTTTACAAGAACGGACAAAATAAATTCATACCAATCGCTATTCAGCTCAGTCGTGAGGCCACTCCAGGACAGATGAACACAGTCTTTCTTCCCAGCGATAATCACTACGACTGGTTGTTAGCCAAGATGTGGGTGAAATCCTGCGACTTCAACGTACACCAGCTGGTCACACACCTTCTCAGAACACACCTGATATCTGAGGTGTTTGCCATAGCCATGTTCAGACAGCTCTCTGCTGTCCATCCTGTGTACAAGTTACTGATCCCTCATGTCCGTTTCACCATTGCCATCAACACTGCAGCACGTGAAAAACTCATCAATGACACTGGGGTCTTTAATGAGGCTAATAGCAGTGGAGGGATTGGACTTCAGCAAGTGATCCAAAAGGCCATGCAGACATTAACCTACAAGTCTCTGTGCTTCCCTGAGGCCATGAAAACTCGAGGAGTTGACAACCAGGAAGATCTgcccaactactactacagagaTGATGGCATGCTGGTCTGGGAGGCAGTGAAAAGCTTTGTCTCTGATGTGGTCAAGATCTACTATAGTAGTGATGAGACCGTTCAGGGAGATGAGGAGATCCAGGCTTTTGTTCAGGATGTTTGCTCCTCTGGTATGAAGAATTGTCCCAAGAACGGTGAGTTTCCAAGTGCCCTAAAAACCCAGGAGCAGCTGGTTGAGTATCTGACCGTGGTGATTTTCACAGCTTCAGCACAACATGCAGCAGTCAACTTTGGACAGTTTGACTGGTTTGCTTGGGTCCCGAACACTCCGTCCACCATGCGGAAACCTCCACCCACAGAGAAGGGCAAAGTGGATATGAAGTACATCATGGAGAGTCTGCCGGACCGCCAACGCTCCAGTTGGCATATAGGAGCAGTTTGGGCCCTCAGTCAGTTCCAGGACAGTGAGCTGTTTTTAGGCGAATACCCTGATAAGTATTTCACTGAAAAACTGGTCACTGAAGCAATTGAGAATTTCCGCAAGGAATTATTTGTCATCACTAAGATCATCAGAAAGAGAAATGAAACTCTGGAGCTGCCCTACTTGTATCTGTGTCCAGACAGGATCCCCAACAGCGTGGCCATCTGA
>TCONS_00017588
ATGTTCACGTACACAGTGTCTGTTGTGACTGGAAATCAGGTGTTTGCTGGGACTTTGAACTACATTTACCTGACGCTGGTGGGTGAAGAGAGAAGCAGCGACCGAACTCTGCTGGACAAATCCTGGTTTGAACGTTTGGACAGAGGAAAGGTGGTCTCCATTGACATCCATGTGGAGGAGACTCTTGGAGAGCTTCTGCTGGTCAAACTGGAGAAGGAGAAGTTCCTGATCAATGATGATTGGTACTGCAGGAGCATCAGTGTAACGGCACCCGCTGGAGACTGCTTTGAGTTCCCCTGTTATCGGTGGATAGCTGATCAAAAGGAGCTGGTTCTTCCAGAAGGACGGGGTCGATTGCCTCAAGATGAAAAGCTCTCAATAGTGAAAGAGTGCAGGCACCTGGAACTggaaaacagacaaaaacatttCAGGTGGAAAGAATGGAAACCCGGTTTCCCAATGTCTATTGATGTCAATGGATCCTCTGAACTTCCTTTGGACGTTAAGTTTGATACCGAAAAAGTAGTGGACTTCAAATTGCATTTCCTGAAAGGGATTGGAAATGTTGGTCTTAATAAATGTAAGGGTTATTACCAGTCTTGGAAAGACTTTGCAGATTTTGAAAAAGTGTTCATAACCATTGAGAACACAGTGTCAGAGCATTTGATGCAGAGGTGGAAGGAGGATGCAGTGTTCGGTTATCAGTTCCTAAATGGCTGC

Function

symbol description
alox5b.1 Predicted to enable arachidonate 5-lipoxygenase activity. Predicted to be involved in fatty acid metabolic process and lipid oxidation. Predicted to be located in cytoplasm. Predicted to be active in nuclear envelope. Human ortholog(s) of this gene implicated in artery disease (multiple); asthma (multiple); pancreatic cancer; and pulmonary tuberculosis. Orthologous to human ALOX5 (arachidonate 5-lipoxygenase).

GO:

id name namespace
GO:0051122 hepoxilin biosynthetic process biological_process
GO:0034440 lipid oxidation biological_process
GO:0043651 linoleic acid metabolic process biological_process
GO:0019369 arachidonic acid metabolic process biological_process
GO:0019372 lipoxygenase pathway biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005635 nuclear envelope cellular_component
GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen molecular_function
GO:0005506 iron ion binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0051213 dioxygenase activity molecular_function
GO:0004051 arachidonate 5-lipoxygenase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-131219-3 Predicted to enable arachidonate 5-lipoxygenase activity. Predicted to be involved in fatty acid metabolic process and lipid oxidation. Predicted to be located in cytoplasm. Predicted to be active in nuclear envelope. Human ortholog(s) of this gene implicated in artery disease (multiple); asthma (multiple); pancreatic cancer; and pulmonary tuberculosis. Orthologous to human ALOX5 (arachidonate 5-lipoxygenase).

Ensembl:

ensembl_id ENSDARG00000043085

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017586 False 2278 mRNA 0.46 15 942531 952891
TCONS_00017587 False 1257 mRNA 0.47 8 942623 945804
TCONS_00017588 True 720 mRNA 0.45 6 946719 951118

Neighbor

gene id symbol gene type direction distance location
XLOC_008900 si:dkey-77f5.14 coding downstream 18550 920298 ~ 923981 (-)
XLOC_008896 NA coding downstream 33494 869961 ~ 909037 (-)
XLOC_008898 NA coding downstream 34224 877204 ~ 908307 (-)
XLOC_008899 NA coding downstream 41652 899089 ~ 900879 (-)
XLOC_008897 NA coding downstream 66546 875328 ~ 875985 (-)
XLOC_008902 NA coding upstream 33253 986144 ~ 993587 (-)
XLOC_008903 NA coding upstream 54709 1007600 ~ 1008359 (-)
XLOC_008904 znf1010 coding upstream 64546 1017437 ~ 1022436 (-)
XLOC_008905 si:dkey-77f5.4 coding upstream 72417 1025308 ~ 1031511 (-)
XLOC_008906 si:dkey-77f5.3 coding upstream 80352 1033243 ~ 1038193 (-)
XLOC_008895 NA non-coding downstream 93739 837015 ~ 848792 (-)
XLOC_008908 NA non-coding upstream 187554 1140445 ~ 1143069 (-)
XLOC_008910 LO017713.1 non-coding upstream 368899 1321790 ~ 1321906 (-)
XLOC_008927 AL954387.2 non-coding upstream 1313078 2265969 ~ 2266083 (-)

Expression


Co-expression Network