XLOC_008904 (znf1010)


Basic Information

Item Value
gene id XLOC_008904
gene name znf1010
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 1017437 ~ 1022436 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017590
CTCGGTCGCTCGCTGACTTCACGTTCAGTGTCCAAACccagagaaactcctgctgaagcgactgagctcagactgttataaagatggcgtttattaaagaggagactGAAGATatcaagattgaagaaacattcacagtcaaacatgaagatgCTGAgcaacaaacagATTTGATTGTGCCTAAGGAAGAGGCAGAAGAGAGCACCAGTGAAGAGAAAGAGAAGCCTCACATATGCAGCGAATGCGGAAGCAGTTTCACGAGTAAACTCTCCCTTTATCTCCACAgtaggattcacaccggagagaagctcTTCACCTGTCAGGACTGtgggaagtgtttcagtcagCAAGGAAACTTCATGTACCACGTAAAAACTCACACAGGAGAGAAGCCTTTCACCTGCCAgcagtgtgggaagagcttcatTACTGAGGGAAACCTCAAAACCCACATGAAGACCCACGCCGGAGAAAAGCCCTTCACCTGTAAggagtgcgggaagagtttctcTCAGCACGGACACTTCGTGtaccacatgaggattcacaccggagagaaacctttcGCCTGCCagcagtgtgggaagagttttagcacAAACGGCCATCTTAAAGTCCACATGAGgtttcacaccggagagaaacccttCAGCTGTcagcagtgtggaaagagtttcactgaAAACGCGAGCCTTAAAGCCCACATGAACGTCCACACCGGGGAGAAGCCGTACTCCTGCACTCAATGCGGGAAGAGTTTTCCTTATAAAAGATCGCTTTATTCCCATCAAGCGCTTCACATGGAGGAGAAGCCGTACTCCTGCTCCCAGTGCGAGAAGAGTTTCATTAACCAAGGAGACCTTAACAGGCACCTGAAGGTTCACACCGGAGAAAACCTTTACATTTGCAGTCTGTGTGGAGTGAGCGTCACCACCAAGCGAAACCTGGAGTGTCACATGAACGTTCACACTGATAAGAAGCCGTTCTCCTGccttcagtgtggaaagagcttcaggCACAGTGGATCACTAACTAGGCACAATAAGACTCACTCGTCTCCGCAATAAAACCAGGATGAGAGCTTA

Function

symbol description
znf1010 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-131120-161 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.

Ensembl:

ensembl_id ENSDARG00000093143

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017590 True 1085 mRNA 0.49 3 1017437 1022436

Neighbor

gene id symbol gene type direction distance location
XLOC_008903 NA coding downstream 9078 1007600 ~ 1008359 (-)
XLOC_008890 si:dkey-7i4.21 coding downstream 13884 722475 ~ 1003553 (-)
XLOC_008902 NA coding downstream 23850 986144 ~ 993587 (-)
XLOC_008901 alox5b.1 coding downstream 64546 942531 ~ 952891 (-)
XLOC_008900 si:dkey-77f5.14 coding downstream 93456 920298 ~ 923981 (-)
XLOC_008905 si:dkey-77f5.4 coding upstream 2872 1025308 ~ 1031511 (-)
XLOC_008906 si:dkey-77f5.3 coding upstream 10807 1033243 ~ 1038193 (-)
XLOC_008907 aadac coding upstream 22938 1045374 ~ 1066269 (-)
XLOC_008908 NA coding upstream 118009 1140445 ~ 1143069 (-)
XLOC_008909 lxn coding upstream 157440 1179876 ~ 1198886 (-)
XLOC_008896 NA non-coding downstream 108400 869961 ~ 909037 (-)
XLOC_008910 LO017713.1 non-coding upstream 299354 1321790 ~ 1321906 (-)
XLOC_008927 AL954387.2 non-coding upstream 1243533 2265969 ~ 2266083 (-)
XLOC_008928 NA non-coding upstream 1301230 2323666 ~ 2328284 (-)
XLOC_008932 NA non-coding upstream 1576368 2598804 ~ 2611170 (-)

Expression


Co-expression Network