XLOC_008908


Basic Information

Item Value
gene id XLOC_008908
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 1140445 ~ 1143069 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019111
aattttattttgcttgttttaagcaataACTCACTTCATTGTGGTATATTATTTCTTGAAACAACACAGTATTTTTTGCtagtcaagaaaatgcttcttgatttagaaaTCTTTacatgtttggactagaaacaacacacaaaagctttttttgcagtgtacattaAATACTACAGTATGTTTCGCTGTAATTCATATAGCGCACCCGTACTATGTGCTTTTGACCATGTGCTTAGATAACTTAATTGTGCAATTTAGGACTTTGTTTAGACTTTAaacttaaattacagaaaaactaaaaCACTAGCTTAGATAACCGACTGTAACATTACTGTCTTCATTGTCAAAACTTGAAATAACCTAATAAAAGGAATATAAAACATACTGATTTTTGTGATCAACATTTCCAAGGCAGGCTTATTAAACTGCACgcattttattcattatatttcatTACAGTGCACAAAATAAAAGCTCTTTTCACAGAAGAGGAGACACAGAATGGCAAAGATTACACTGGAGGGGAAATAAACACTGCTGTTGTCTCTGATAGTGAGGCAGGAAGATGACCCTGACAGTGTTGGTCTATCAGTGATGTCTAGTACTCTGAAAAACAACTGCAGTATGAAAATAAGCTTAATGTGtgcaacaaatgaacaaacacaaACCATGTCAGATGTTCTAATGTCTCCACAACAAACACCTTTACAAACCATCAGCTGGTTAACATAAACTCATGAAAACTAGTAGCGAATGCTTTCCAGTAACagttgttttcctgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttttcctgctTGTAAACTGTTGTTAACTGTAGTTGGTAAAAATTTGTGTATTGAAATATTTTGCATACattataatgtaaaaattaatttgcGCTCATAATCTTTATTATAGATCACCATAATCTTCCCTCCCCCTCGAAAAGACTTCTTCACTTGTGGTCACATGGAAcacctttagggtggagctatcagtaatttagggcggagctatcagtcaattcgggtggagctatcagtaattttgggcggagctatcagtcctttaaagtagagctatcagtactttagggtggaccaatcagtcctttagggcggggctatcagtactttagggtggggctatcagaccATTAGGccagggctatcagttatttgggTTGAAGCTATCAGTAacttagggcgggtctatcagttcAAAGCGGAGTTTTAAATACTAAGGGGAGAGTTATACattttttagggcggagctatcgcgGGGATTATTAGTCTATTAGGGCATATCTGTCAATAATttaggggcggagctatcagtactttagggtggacctatcagtcctttagggcggggctatcagacCATTAGGCCAGGGCTTTAGGGTAAGGCTGTCAGTAATTTAGGGAGGGTCTATCAGTCActtggggcggagctatcagggcAAGGTTATCAGTCTATTAAGGCAGGTCTATCAGTAATTTGGTTCGGAGTTATCAGTACTTTAGGTCAAAGCTATTAGTAATTTAGGGAGGGtctttcagtcctttagggcggagctatcagggcGGGATTATCAAAccattagggcagggctatcagtaatttgggtcggagctatcagtactttaagGCAAGGTTATCAGTAATTTATGGAGGgtctatcagtcttttagggtggtgTTTTAAATACTTAAGGGCGGACCTATCAGGCCGGCATTATCTGAccattagggcagggctatcagtaatttagagcgaagctatcagtcctttatggTGGGCCTATAAGTCagttagggcgggactatcagttagttagggcgggactatcagtcatttagggtggggctattagtacTTTAGGGTGGACCTATCCATtgtttagggtgtggctatcagtcctcTAGGGCGGGGCTttaagtcatttagggcagagctatcagtcctttagggtggactTTAAACATATTTACTTGACAAAAATAAAGACTTCATATTTCCACAAAGAACTGGTTCTCATAGTGAAGTGCAGAGGATTAAGTCCGGGCCTCCAGTAGGCAGATCAGGATGTCATGACCATGTAGATCTGCATCTGTGCTTCAGTGTCCTCTGTTTGGCATCTCTATTTTGGTGGAGGTCTCGGTCAGAGAGCCGTGAGGGAGCGGAGCGCGGCTCAGTGTGGCAGTCAGCTTCTTGCGGAAACCGCGACACAGGAAAACATAAATGAGCGGGTCCAGACACACATTAGAGGATGATATCCAGAGCGTGATCTCTTTGGCGAAATACAGCTGGTTTTGGGCCCAGCACTGGGCTGAAGTGCTCCGCGTCTGGCTGAGGGTGTACGGGACTCGGGCCAGGTGGAAGGGGGcgaagcaaacaaagaaaacccCCACCACCACAAACACCTGAGGAGCAGAGGAGAGTTAGCATGCGTTAGCATCTCTTGCATGGTTGACATATTGGAAAGTTTATTTTACAGTGCTGCTTAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019111 True 2523 lncRNA 0.42 2 1140445 1143069

Neighbor

gene id symbol gene type direction distance location
XLOC_008907 aadac coding downstream 74176 1045374 ~ 1066269 (-)
XLOC_008906 si:dkey-77f5.3 coding downstream 102252 1033243 ~ 1038193 (-)
XLOC_008905 si:dkey-77f5.4 coding downstream 108934 1025308 ~ 1031511 (-)
XLOC_008904 znf1010 coding downstream 118009 1017437 ~ 1022436 (-)
XLOC_008903 NA coding downstream 132086 1007600 ~ 1008359 (-)
XLOC_008909 lxn coding upstream 36807 1179876 ~ 1198886 (-)
XLOC_008910 LO017713.1 coding upstream 178721 1321790 ~ 1321906 (-)
XLOC_008911 si:dkeyp-97b10.3 coding upstream 309765 1452834 ~ 1485086 (-)
XLOC_008912 ift80 coding upstream 351424 1494493 ~ 1534258 (-)
XLOC_008913 trim59 coding upstream 431287 1574356 ~ 1584137 (-)
XLOC_008902 NA non-coding downstream 146858 986144 ~ 993587 (-)
XLOC_008898 NA non-coding downstream 232138 877204 ~ 908307 (-)
XLOC_008899 NA non-coding downstream 239566 899089 ~ 900879 (-)
XLOC_008897 NA non-coding downstream 264460 875328 ~ 875985 (-)
XLOC_008927 AL954387.2 non-coding upstream 1122900 2265969 ~ 2266083 (-)
XLOC_008928 NA non-coding upstream 1180597 2323666 ~ 2328284 (-)
XLOC_008932 NA non-coding upstream 1455735 2598804 ~ 2611170 (-)
XLOC_008933 NA non-coding upstream 1475210 2618279 ~ 2625928 (-)
XLOC_008896 NA non-coding downstream 231408 869961 ~ 909037 (-)

Expression


Co-expression Network