XLOC_008911 (si:dkeyp-97b10.3)


Basic Information

Item Value
gene id XLOC_008911
gene name si:dkeyp-97b10.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 1452834 ~ 1485086 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017598
GGGGCCTCATACACTGTGGTAAACCATCATGGTTTTACACAACCTACATAACGTCTACTTAATTTGATGTTAtttcatttgtgtattgttgagCACTCCTTTTCCTCAGTTGTATTGTTTCTGTGTGTAGCCTAATGGCGCGTATACAGGCTTGCAGTAAACAAGCAAGTTCCCGCCACTTCCTGCTGCTGCCAGTCGCGGAAACACCAGCGTGCgcgtgtgtaatgtgtgtgtgctgcatgaaTGGGTTCAGGATTGACCGGGTTTATTGTCTCTTATCTGTAAATATCTCCTCACGGAATATCTGAGGCGCTGTCTTCGCGCGCAAATAATGGTCGCGCACATGGCAGATTATGCAGAAACAAAACATCTGACCGACGGGAATGGAGACGTTTCACCATCAGACCTGAAGGATCATCCTGCTGAAAGCTCCCACAGCAGTTCAGacagCACATCAGCAGAGGAGAGCTCGGAGGAAGACGAGACtcaggaggaggaagaggacaGAGAGTCAGACTCCAACACGAAAGCCGGTGCTGAAAATCACAGTGATGAGCCGCTCGCGTCCTGCTGTGAGAAGTGTAGAGCTCTTAAGAACCCTAAATATGAGCTGGTCACCCCCAGGAAAATGTCCAAAGAGCGGCTGCAgctCCAGCTGGACGCTGAGGGTGTGTACGAGTGTTCGGACACTGGGCTGGTGTTCGAGGTCTCCCAGCGGGTCAAGATCACCTACTGCGTCCTGTCCTGGAGCAGATTCAGCACATACCTGACCGGGTCATGGAAATTTGCCGGACCCATTTTTGATGTGGACTGCGATCCGGCTATCCTGAAATCCATCCAGTTCCCGCATTCACTGTGTCTCGCAGCAGATAAAGACAACGAGGTGAACTTCAGCGTTCTGCATGTGAAGAACAGTCGGGGTCTGATCGAGCCGTCCAGCGATCACTCCGGGAGTCACGTGAAGTGGACGGTGTCGTCTCTGTCCCCCGTGGGTCCCGTCGTCCAGACCTCCAGATCCGCAGAGCATCATGGGGTGGTGCAGGTCTTCAGAGAGCTGGGTCTGGAGAGCTCGTCCTTCTCCTTCAGGGTTTACCTGGCCAGAAACATCTGCTCTGACATCAAGGACATCAGGAAGGCCGTTCGGAGGGCGAACAACTGTAAGAACAACAAAAAGTACATTCTAGTTGACAAACCACCAACATGCATGCTGGAGGAGAACAGAAAGTACCGTCTGATCAGCGAACCCGTGGGTCACATCACACCAGAGgacatGCTCTTCACTCCGGACAGTGTGGAGGTGAAGGGATACATTGAGGTCTTCTTTGAGGACAGTCCTCCATTCAAACTCTCCCTGACGGATGCAGACTCGGGTCAGACTGTATGGACGTCCACTATCAGAGAGGgAGACTGCACACACCATGTAGAAGAAATGCCCAAAAGACCAACGAAAGGCACAAAGAGACACAGCAGCACCTCAGACGATGAGCTGAGCTACAAGCGCAGCAAGAAAACTCATGCTGTGGATGAGCCTGACTGTAACGCGGTGGCTGTGGCTCCAGCTCTGACCGATCAGCAGCTGATGCGAGTGGCCAAACACATGGGGAAGGAGTGGAAGATCGTGGCCATCAGCTATCTGGGCTTCAGCAACCAGAACCTGGAGGAGATGGAGGCGGCTGAGGAGAACGCCACCATGCTGAAGTTCACCATGCTGGAGCGCTGGAGACGCCGGCAGCCCAAGGGGAAAGCTGGAGTTCAGGAGCTGCACAATAGTCTTAAAGACAACGACGACGTTCCCAATGAGGTCATCGCTGTGCTAGACGagatgCTACACAATAAATGACCGCATGAAGCTGTGAGACGAGCATGTGGACGTCTGCTGATCTCCACCATGTGACGGAAATGTCTTTTAACCACTATTAGAGAGCCATGAAGAGGTCCTGCAGTAAAAGGCCAGTCAGCTTTAACACAGGAGTCTGCCGCGCTCGCCGGTTTACAAACCTCTCAACCAATCTGAGCTCTGTTTACTGTTGAGTGGGAGATTTTGTTGGTATGTTGATCTTTGtgtttagcttttatttttttatatcttgtACATATTGTAAGTATTTGTCGAATAATGAGCCAGTTTTTATGAAACTGTTTTGATATTTCGGTGCTTTTTCCTGACGGTTGTGGTAAAACTGCGTATAAATATCATGATATTCATGTAAAACAAAGACTCTAATCCACACGTGAGCATCAACAGTACCTTGTAGATGAACTTCCAGTGGTCGAACACACCACACTGTGTAGGAATATTGTCTGGAAGGGTGTTTTCTCTAATGTGCTGTCTCAGGGGATGTTTGGAGGAGTCTGACTCACCTTTCCTTAAGTGTATAAATCAGGGAAATGAACAAAATCTGCAGCGCTCCTGTTATTGAAGCATTTCAGACATTTTTGTGTGTCAGAAAGACTTGTTCTGCAATATGAGGCTGTTTGAACTGCTTTCTGTTCAAAGTTCAGTCAATAATGCCTCAAAGCAAGATTAaacaccacaaaatca
>TCONS_00017599
ATTTATTTTATAACCAAAAGAGAACCTTTTTAGAACGTTCCCTGTAGGttatttgttggttttatttttgtaacataGAGAGAACCTTCCCAGAACGTTCCCTGTAGGTTAGTCATACTTGCGATTGCGAGTTAGTCAGAATTCTGAGGTAAAAAGTCgcaattgcgagttataaagtcagaattctgagctATAAATCTGAAATTACAGCAAGTTTTGACCCAAAACACTAAAGCATAAGGTGACAAGTTACTGTCCTATTGTTCAACCAAAACCATCACTGACCTCAAGGGGGCCTCATACACTGTGGTAAACCATCATGGTTTTACACAACCTACATAACGTCTACTTAATTTGATGTTAtttcatttgtgtattgttgagCACTCCTTTTCCTCAGTTGTATTGTTTCTGTGTGTAGCCTAATGGCGCGTATACAGGCTTGCAGTAAACAAGCAAGTTCCCGCCACTTCCTGCTGCTGCCAGTCGCGGAAACACCAGCGTGCgcgtgtgtaatgtgtgtgtgctgcatgaaTGGGTTCAGGATTGACCGGGTTTATTGTCTCTTATCTGTAAATATCTCCTCACGGAATATCTGAGGCGCTGTCTTCGCGCGCAAATAATGGTCGCGCACATGGCAGATTATGCAGAAACAAAACATCTGACCGACGGGAATGGAGACGTTTCACCATCAGACCTGAAGGATCATCCTGCTGAAAGCTCCCACAGCAGTTCAGacagCACATCAGCAGAGGAGAGCTCGGAGGAAGACGAGACtcaggaggaggaagaggacaGAGAGTCAGGTGACTACTCCAACACGAAAGCCGGTGCTGAAAATCACAGTGATGAGCCGCTCGCGTCCTGCTGTGAGAAGTGTAGAGCTCTTAAGAACCCTAAATATGAGCTGGTCACCCCCAGGAAAATGTCCAAAGAGCGGCTGCAgctCCAGCTGGACGCTGAGGGTGTGTACGAGTGTTCGGACACTGGGCTGGTGTTCGAGGTCTCCCAGCGGGTCAAGATCACCTACTGCGTCCTGTCCTGGAGCAGATTCAGCACATACCTGACCGGGTCATGGAAATTTGCCGGACCCATTTTTGATGTGGACTGCGATCCGGCTATCCTGAAATCCATCCAGTTCCCGCATTCACTGTGTCTCGCAGCAGATAAAGACAACGAGGTGAACTTCAGCGTTCTGCATGTGAAGAACAGTCGGGGTCTGATCGAGCCGTCCAGCGATCACTCCGGGAGTCACGTGAAGTGGACGGTGTCGTCTCTGTCCCCCGTGGGTCCCGTCGTCCAGACCTCCAGATCCGCAGAGCATCATGGGGTGGTGCAGGTCTTCAGAGAGCTGGGTCTGGAGAGCTCGTCCTTCTCCTTCAGGGTTTACCTGGCCAGAAACATCTGCTCTGACATCAAGGACATCAGGAAGGCCGTTCGGAGGGCGAACAACTGTAAGAACAACAAAAAGTACATTCTAGTTGACAAACCACCAACATGCATGCTGGAGGAGAACAGAAAGTACCGTCTGATCAGCGAACCCGTGGGTCACATCACACCAGAGgacatGCTCTTCACTCCGGACAGTGTGGAGGTGAAGGGATACATTGAGGTCTTCTTTGAGGACAGTCCTCCATTCAAACTCTCCCTGACGGATGCAGACTCGGGTCAGACTGTATGGACGTCCACTATCAGAGAGGgAGACTGCACACACCATGTAGAAGAAATGCCCAAAAGACCAACGAAAGGCACAAAGAGACACAGCAGCACCTCAGACGATGAGCTGAGCTACAAGCGCAGCAAGAAAACTCATGCTGTGGATGAGCCTGACTGTAACGCGGTGGCTGTGGCTCCAGCTCTGACCGATCAGCAGCTGATGCGAGTGGCCAAACACATGGGGAAGGAGTGGAAGATCGTGGCCATCAGCTATCTGGGCTTCAGCAACCAGAACCTGGAGGAGATGGAGGCGGCTGAGGAGAACGCCACCATGCTGAAGTTCACCATGCTGGAGCGCTGGAGACGCCGGCAGCCCAAGGGGAAAGCTGGAGTTCAGGAGCTGCACAATAGTCTTAAAGACAACGACGACGTTCCCAATGAGGTCATCGCTGTGCTAGACGagatgCTACACAATAAATGA

Function

symbol description
si:dkeyp-97b10.3 Predicted to be involved in mRNA export from nucleus and regulation of DNA-templated transcription, elongation. Predicted to act upstream of or within signal transduction. Predicted to be located in cytoplasm. Predicted to be part of THO complex part of transcription export complex.

GO:

id name namespace
GO:0006406 mRNA export from nucleus biological_process
GO:0032784 regulation of DNA-templated transcription, elongation biological_process
GO:0007165 signal transduction biological_process
GO:0000347 THO complex cellular_component
GO:0000445 THO complex part of transcription export complex cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-131121-429 Predicted to be involved in mRNA export from nucleus and regulation of DNA-templated transcription, elongation. Predicted to act upstream of or within signal transduction. Predicted to be located in cytoplasm. Predicted to be part of THO complex part of transcription export complex.

Ensembl:

ensembl_id ENSDARG00000086712

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017598 False 2542 mRNA 0.49 15 1452834 1484795
TCONS_00017599 True 2137 mRNA 0.50 15 1453536 1485086

Neighbor

gene id symbol gene type direction distance location
XLOC_008910 LO017713.1 coding downstream 130928 1321790 ~ 1321906 (-)
XLOC_008909 lxn coding downstream 253948 1179876 ~ 1198886 (-)
XLOC_008908 NA coding downstream 309765 1140445 ~ 1143069 (-)
XLOC_008907 aadac coding downstream 386565 1045374 ~ 1066269 (-)
XLOC_008906 si:dkey-77f5.3 coding downstream 414641 1033243 ~ 1038193 (-)
XLOC_008912 ift80 coding upstream 9407 1494493 ~ 1534258 (-)
XLOC_008913 trim59 coding upstream 89270 1574356 ~ 1584137 (-)
XLOC_008914 nnr coding upstream 104727 1589813 ~ 1590858 (-)
XLOC_008915 kpna4 coding upstream 111422 1596508 ~ 1622485 (-)
XLOC_008916 ppm1lb coding upstream 145729 1630815 ~ 1651766 (-)
XLOC_008903 NA non-coding downstream 444475 1007600 ~ 1008359 (-)
XLOC_008902 NA non-coding downstream 459247 986144 ~ 993587 (-)
XLOC_008898 NA non-coding downstream 544527 877204 ~ 908307 (-)
XLOC_008927 AL954387.2 non-coding upstream 780883 2265969 ~ 2266083 (-)
XLOC_008928 NA non-coding upstream 838580 2323666 ~ 2328284 (-)
XLOC_008932 NA non-coding upstream 1113718 2598804 ~ 2611170 (-)
XLOC_008933 NA non-coding upstream 1133193 2618279 ~ 2625928 (-)
XLOC_008940 CABZ01086049.1 non-coding upstream 1251297 2736383 ~ 2736498 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000092_04981384_04996796 NA coding CI01000092 null 4981384 ~ 4997036 (+)