XLOC_008912 (ift80)


Basic Information

Item Value
gene id XLOC_008912
gene name ift80
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 1494493 ~ 1534258 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017600
GAACTCGTTCTCGCGAGACGTGGGGCCAGAGTTGTTTTACCGTCAGTAATCTTTCTAGTATGCTGCTACTAAGAAATCTGTAACGACTAAAAGGAGATTTGGGATGTAATAAAGCGGCTAGAGTGTACTCAGAAAGTGCCCCTCATCACTATGGTCAGCATCTACATTATCCAATGCTTCAAATATGAGTTTGTCTGGAGCTCGTTAGCGCTGTAGTAACAACGCGTTTCCGTGGCAACGACGCCTTCAGCAGTCAGGGACATTACCAGAGTAAAACACCAGAGGAGACGCTGAAGGATGCGATTGAAAACATCGTTGCTGAAGGAGCCCAAACACAGAGAGCTGGTCAGTTGTGTGGGATGGACCAGCGCAGATGAGCTTTACTCCTGCAGCGATGACCACCAAATACTCAAGTGGAACCTGCTCAGCAATGACACCAGTGTCGTGGTCAAACTCCAGGATGAGATTTATCCAATTGATCTGCACTGGTTCCCCAAGACTGTGAGCGGAAAGAAACAAGCCGCGGCGGAGATCTTTGCCCTCACCAGCTCTGATGGTAAACTGCACCTTGTGAGTAAATCAGGTCGTATTGAGAAGAGTGTGGAGGCCCATAGAGGAGCTGTGCTGGCTGGACGCTGGAATTATGACGGGACCGCTCTTATCACAGCTGGTGAAGACGGACAACTGAAGATCTGGTCTAAGAGTGGGATGCTGAGGTCTACTCTAGCTCAACAAGGGATGCCTGTGTACTCTGTGGCGTGGGCACCAGACTCTGGCCGGGTCCTCTATACATCCGGTCGACAGCTGGTTGTGAAGCCACTACAGCCCAACTCAAAAGTCCTGCAGtggaaagctcatgatggagtcattCTGAAGGTGGACTGGAGTGCGGTCAATGATCTGATACTGTCAGGAGGAGAAGACTGCAAATATAAGGTGTGGGACAGCTATGGGCGGCTCCTCTTCTCCAGTGCTCCTCATGATTACCCGATCACCTCTGTGGCCTGGGCTCCTGACGGGGAGCTGTTTGCTATGGGCTCCTTCCACACGCTCAGGCTGTGTGATAAGACTGGGtggTCATACTCTCTGGAGAAGCCCAGCACCGGGAGTCTGCTGAGTCTGTGCTGGTCTGCAGATGGCACTCAGCTGGCAGGAGCCTGCGGGAACGGACACGTGCTGTTTGCTCATATCGTGGAGCAGCGCTGGGAGTGGAAGAACTTTGAAATCACACTGACTAAGAGACGCACTATGCAGGTCAGAAACGTGTTGAATGATGCAGTGGATGTCCTGGAGTTCAGAGATCGGGTCATCAAGGCATCGCTGGCTCATGGTCATCTGGTGGTCACCACTTCTCTGCAGTGTTACGTCTACAGTGCTAAGAACTGGAATACTCCACTGATCTTTGACCTGAAGGAGGGTACGGTCAGTCTCATTGTGCAAGCAGAAagACACTTTCTGTTGGTGGATGGAGCGGAGGTGTATGTGTACTCGTATGAGGGTCGTCTGATTTCATCCCCCAAGAGTCCCGGCATGAGAATGGACATCCTGAACTCTCAGTCCATCTCGCTGAGCAACGACACCATCGCTATACGGGACACCACTGATGAACGAGTCGTCTTTCTGTTTGAGGCTCAGACTGGAAAAGCTATTGGTGATGGCAAACCTTTGATCCACAAGATTGAGGTTGTGCTAATCGCGCTGGATCAGTGCGGCTCGTCTAATGACAGAAGGATTGCACTGATCGATAAGAATCGTGACCTCTACCTGACCTCTGTTAGGAAACTGGGCCGGGCCCACAGCATCTATAAGATTGGTTCGATGGTCGACACGATGGCCTGGAACGACTCTGCAAACATCCTGTGTGGAATCCAGGACAACCGGTTCACAGTGTGGTATTACCCGAGTGTAGTGTTTGTGGACAAAGACCTGCTGCCTAAAACCATCTTCACCAAGGACAGCAGTGAGTTCAGTCGTCCTCCTCAGATGGTGAGCTATGTGGGCAGTCAGGTGACCGTCAGACGTGTGGACGGCTCTCTGGTATGCACTGCGGTGTCACCGTACCCCACTTTACTGCATGAGTACACCAGCAGCGCCCGCTGGGAGGATGCTCTCCGCATCTGCCGCTTCGCCAAGGATCAGACGCTCTGGTCGTGTTTGGCTGGACTGGCGATGGCCAACAGGGAGCTGAGCACAGCAGAGGTGGCGTACGCAGCTATAGGAGAGATTGATAAGGTGCAGTACATCAACTTCATTAAAGATCTGCCATCTAAAGACTCGTGTTTGGCTCACATCCTGCTGTTCAGTGGACACGTGCAGGAGGCCGAGGCCACGCTCCTGCAGGCCAACCTCATTTACCACGCCATCCAGATCCACATCAACCTCTACAACTGGGACAGGGCGCTGGAGTTAGCAGTCAAGTACAAAACCCACGTGGACACGGTGCTCGCTCACAGACACAAGTTCCTGCAGGACTTTGGCAAACAGGAGACCAACAAGAGATTCCTGCAGTACTCTGAGGGAGTGGAGGTGGACTGGGAGAAGATCCAGGCTAAAATTGAAATGGAGTTCGCTAAAGAGCGGGAAAGAGCAGCCAACTCGTCTGTCAGAAGCAGTGTGTCTGTTCGGCGATAAACACACACTTTCTTATCTAGTGCAGGTAAATCCAGGCTGGACAGACActgatttatacacacacactgtcaaCATGCATCATGTCTAgttctgttttatttatctatAACAACCTCTTGGTGTCTTTCAGaagagatttgttttgttttttttaataaattgagaTTTAAAAGAGCAATA
>TCONS_00017601
CAGAGTTGTTTTACCGTCAGTAATCTTTCTAGTATGCTGCTACTAAGAAATCTGTAACGACTAAAAGGAGATTTGGGATGTAATAAAGCGGCTAGAGTGTACTCAGAAAGTGCCCCTCATCACTATGGTCAGCATCTACATTATCCAATGCTTCAAATATGAGTTTGTCTGGAGCTCGTTAGCGCTGTAGTAACAACGCGTTTCCGTGGCAACGACGCCTTCAGCAGTCAGGGACATTACCAGAGTAAAACACCAGAGGAGACGCTGAAGGATGCGATTGAAAACATCGTTGCTGAAGGAGCCCAAACACAGAGAGCTGGTCAGTTGTGTGGGATGGACCAGCGCAGATGAGCTTTACTCCTGCAGCGATGACCACCAAATACTCAAGTGGAACCTGCTCAGCAATGACACCAGTGTCGTGGTCAAACTCCAGGATGAGATTTATCCAATTGATCTGCACTGGTTCCCCAAGACTGTGAGCGGAAAGAAACAAGCCGCGGCGGAGATCTTTGCCCTCACCAGCTCTGATGGTAAACTGCACCTTGTGAGTAAATCAGGTCGTATTGAGAAGAGTGTGGAGGCCCATAGAGGAGCTGTGCTGGCTGGACGCTGGAATTATGACGGGACCGCTCTTATCACAGCTGGTGAAGACGGACAACTGAAGATCTGGTCTAAGAGTGGGATGCTGAGGTCTACTCTAGCTCAACAAGGGATGCCTGTGTACTCTGTGGCGTGGGCACCAGACTCTGGCCGGGTCCTCTATACATCCGGTCGACAGCTGGTTGTGAAGCCACTACAGCCCAACTCAAAAGTCCTGCAGtggaaagctcatgatggagtcattCTGAAGGTGGACTGGAGTGCGGTCAATGATCTGATACTGTCAGGAGGAGAAGACTGCAAATATAAGGTGTGGGACAGCTATGGGCGGCTCCTCTTCTCCAGTGCTCCTCATGATTACCCGATCACCTCTGTGGCCTGGGCTCCTGACGGGGAGCTGTTTGCTATGGGCTCCTTCCACACGCTCAGGCTGTGTGATAAGACTGGGtggTCATACTCTCTGGAGAAGCCCAGCACCGGGAGTCTGCTGAGTCTGTGCTGGTCTGCAGATGGCACTCAGCTGGCAGGAGCCTGCGGGAACGGACACGTGCTGTTTGCTCATATCGTGGAGCAGCGCTGGGAGTGGAAGAACTTTGAAATCACACTGACTAAGAGACGCACTATGCAGGTCAGAAACGTGTTGAATGATGCAGTGGATGTCCTGGAGTTCAGAGATCGGGTCATCAAGGCATCGCTGGCTCATGGTCATCTGGTGGTCACCACTTCTCTGCAGTGTTACGTCTACAGTGCTAAGAACTGGAATACTCCACTGATCTTTGACCTGAAGGAGGGTACGGTCAGTCTCATTGTGCAAGCAGAAagACACTTTCTGTTGGTGGATGGAGCGGAGGTGTATGTGTACTCGTATGAGGGTCGTCTGATTTCATCCCCCAAGAGTCCCGGCATGAGAATGGACATCCTGAACTCTCAGTCCATCTCGCTGAGCAACGACACCATCGCTATACGGGACACCACTGATGAACGAGTCGTCTTTCTGTTTGAGGCTCAGACTGGAAAAGCTATTGGTGATGGCAAACCTTTGATCCACAAGATTGAGGTTGTGCTAATCGCGCTGGATCAGTGCGGCTCGTCTAATGACAGAAGGATTGCACTGATCGATAAGAATCGTGACCTCTACCTGACCTCTGTTAGGAAACTGGGCCGGGCCCACAGCATCTATAAGATTGGTTCGATGGTCGACACGATGGCCTGGAACGACTCTGCAAACATCCTGTGTGGAATCCAGGACAACCGGTTCACAGTGTGGTATTACCCGAGTGTAGTGTTTGTGGACAAAGACCTGCTGCCTAAAACCATCTTCACCAAGGACAGCAGTGAGTTCAGTCGTCCTCCTCAGATGGTGAGCTATGTGGGCAGTCAGGTGACCGTCAGACGTGTGGACGGCTCTCTGGTATGCACTGCGGTGTCACCGTACCCCACTTTACTGCATGAGTACACCAGCAGCGCCCGCTGGGAGGATGCTCTCCGCATCTGCCGCTTCGCCAAGGATCAGACGCTCTGGTCGTGTTTGGCTGGACTGGCGATGGCCAACAGGGAGCTGAGCACAGCAGAGGTGGCGTACGCAGCTATAGGAGAGATTGATAAGGTGCAGTACATCAACTTCATTAAAGATCTGCCATCTAAAGACTCGTGTTTGGCTCACATCCTGCTGTTCAGTGGACACGTGCAGGAGGCCGAGGCCACGCTCCTGCAGGCCAACCTCATTTACCACGCCATCCAGATCCACATCAACCTCTACAACTGGGACAGGGCGCTGGAGTTAGCAGTCAAGTACAAAACCCACGTGGACACGGTGCTCGCTCACAGACACAAGTTCCTGCAGGACTTTGGCAAACAGGAGACCAACAAGAGATTCCTGCAGTACTCTGAGGGAGTGGAGGTGGACTGGGAGAAGATCCAGGCTAAAATTGAAATGGAGTTCGCTAAAGAGCGGGAAAGAGCAGCCAACTCGTCTGTCAGAAGCAGTGTGTCTGTTCGGCGATAAACACACACTTTCTTATCTAGTGCAGGTAAATCCAGGCTGGACAGACActgatttatacacacacactgtcaaCATGCATCATGTCTAgttctgttttatttatctatAACAACCTCTTGGTGTCTTTCAGaagagatttgttttgttttttttaataaattgagaTTTAAAAGAGC
>TCONS_00017602
CCGTCAGTAATCTTTCTAGTATGCTGCTACTAAGAAATCTGTAACGACTAAAAGGAGATTTGGGATGTAATAAAGCGGCTAGAGTGTACTCAGAAAGTGCCCCTCATCACTATGGTCAGCATCTACATTATCCAATGCTTCAAATATGAGTTTGTCTGGAGCTCGTTAGCGCTGTAGTAACAACGCGTTTCCGTGGCAACGACGCCTTCAGCAGTCAGGGACATTACCAGAGTAAAACACCAGAGGAGACGCTGAAGGATGCGATTGAAAACATCGTTGCTGAAGGAGCCCAAACACAGAGAGCTGGTCAGTTGTGTGGGATGGACCAGCGCAGATGAGCTTTACTCCTGCAGCGATGACCACCAAATACTCAAGTGGAACCTGCTCAGCAATGACACCAGTGTCGTGGTCAAACTCCAGGATGAGATTTATCCAATTGATCTGCACTGGTTCCCCAAGACTGTGAGCGGAAAGAAACAAGCCGCGGCGGAGATCTTTGCCCTCACCAGCTCTGATGGTAAACTGCACCTTGTGAGTAAATCAGGTCGTATTGAGAAGAGTGTGGAGGCCCATAGAGGAGCTGTGCTGGCTGGACGCTGGAATTATGACGGGACCGCTCTTATCACAGGTTCCACATACACCTTCAAAAGACTTCAGTCATCTCTTCACATCACAGATTTAAAGAGAATAAATCAATGATccaataaaacagacacacagagcGGGCTATTTCTATGTATAAAAAGCAAAATGCCTTGTCGGTAGTGCGCTGAGATGTAGCATCATTGTACTTCAGGTGTTTTGAGTTCAATCACTGCTTGCGAATATTTCCTGATCTTGTCCTTCTCTCTCTCCAGCTTCACCTGTCCTGCTACTGACACATTGTAGTGAAAGCAAAAATGCTAAGTATATATTGAGTTGAAGTCAGATTCATTAGCCGgcctgaat

Function

symbol description
ift80 Acts upstream of or within several processes, including cilium assembly; convergent extension; and retina morphogenesis in camera-type eye. Predicted to be located in motile cilium. Predicted to be part of intraciliary transport particle B. Predicted to be active in centrosome and cilium. Is expressed in several structures, including eye; notochord; pectoral fin; pectoral fin bud; and pronephric duct. Used to study asphyxiating thoracic dystrophy; asphyxiating thoracic dystrophy 2; and ciliopathy. Human ortholog(s) of this gene implicated in asphyxiating thoracic dystrophy 2. Orthologous to human IFT80 (intraflagellar transport 80).

GO:

id name namespace
GO:0060271 cilium assembly biological_process
GO:0060026 convergent extension biological_process
GO:0060042 retina morphogenesis in camera-type eye biological_process
GO:0008104 protein localization biological_process
GO:0031514 motile cilium cellular_component
GO:0042995 cell projection cellular_component
GO:0030992 intraciliary transport particle B cellular_component
GO:0005813 centrosome cellular_component
GO:0005929 cilium cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-041212-50 Acts upstream of or within several processes, including cilium assembly; convergent extension; and retina morphogenesis in camera-type eye. Predicted to be located in motile cilium. Predicted to be part of intraciliary transport particle B. Predicted to be active in centrosome and cilium. Is expressed in several structures, including eye; notochord; pectoral fin; pectoral fin bud; and pronephric duct. Used to study asphyxiating thoracic dystrophy; asphyxiating thoracic dystrophy 2; and ciliopathy. Human ortholog(s) of this gene implicated in asphyxiating thoracic dystrophy 2. Orthologous to human IFT80 (intraflagellar transport 80).

Ensembl:

ensembl_id ENSDARG00000038879

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017600 False 2811 mRNA 0.51 20 1494493 1534258
TCONS_00017601 False 2781 mRNA 0.51 20 1494497 1534232
TCONS_00017602 True 948 lncRNA 0.46 4 1523472 1534219

Neighbor

gene id symbol gene type direction distance location
XLOC_008911 si:dkeyp-97b10.3 coding downstream 9407 1452834 ~ 1485086 (-)
XLOC_008910 LO017713.1 coding downstream 172587 1321790 ~ 1321906 (-)
XLOC_008909 lxn coding downstream 295607 1179876 ~ 1198886 (-)
XLOC_008908 NA coding downstream 351424 1140445 ~ 1143069 (-)
XLOC_008907 aadac coding downstream 428224 1045374 ~ 1066269 (-)
XLOC_008913 trim59 coding upstream 40098 1574356 ~ 1584137 (-)
XLOC_008914 nnr coding upstream 55555 1589813 ~ 1590858 (-)
XLOC_008915 kpna4 coding upstream 62250 1596508 ~ 1622485 (-)
XLOC_008916 ppm1lb coding upstream 96557 1630815 ~ 1651766 (-)
XLOC_008917 sptssb coding upstream 145704 1679962 ~ 1687204 (-)
XLOC_008903 NA non-coding downstream 486134 1007600 ~ 1008359 (-)
XLOC_008902 NA non-coding downstream 500906 986144 ~ 993587 (-)
XLOC_008899 NA non-coding downstream 593614 899089 ~ 900879 (-)
XLOC_008927 AL954387.2 non-coding upstream 731711 2265969 ~ 2266083 (-)
XLOC_008928 NA non-coding upstream 789408 2323666 ~ 2328284 (-)
XLOC_008932 NA non-coding upstream 1064546 2598804 ~ 2611170 (-)
XLOC_008933 NA non-coding upstream 1084021 2618279 ~ 2625928 (-)
XLOC_008940 CABZ01086049.1 non-coding upstream 1202125 2736383 ~ 2736498 (-)

Expression


Co-expression Network