XLOC_008914 (nnr)


Basic Information

Item Value
gene id XLOC_008914
gene name nnr
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 1589813 ~ 1590858 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017604
AACACAGACGCAGAGATGGACAGCGATTCAGCAAGCAGCGTTTACAGCGGATCTCAGAGCTCTGTGGAGGTGAAGGATCTCTCTCCTCCATTTTATCAGTTTAAAGCTTTCATGCCTGTGGATGAAGGTGAAGATGCTCCAGACGAGGCCAATATTAAAGTCTCACAAAGGTATTATTCTGTTCTACATGACTAACTGTATTTGAGTAAACAAACGACTAATAAACACACCACTGTGCCTGacacaaacactgcactgaaACTGGACTGTTGTCATCCTAAATCAGGTGCTCTTGTGGAAACTGCAGACTCACTCCAGAGGAAAACGTTTGTTGTAGAGACATACCACAGGTGAAGCACAAATGTGGCCAGGTTAACGTATGTTGCATAACAAACCACCCGGGGTTTGAGCTTGTCACTCTGAACCCAGACGTCCTGCAGGTGTCTTATTGCAGATATCAGGATGTTTATGGGAAGACACTCCCAGATCTCAACAGGTTGGTTTTAAAGATCCATCACTGTGCTCTGTCGCTTCAGTAACATTATAATGAAGTCTGCTACCGAACGTTAATGCATCTTATGTTTATTATCTCCATTTCTCCTATCAAACCTCATGTAAATTGAGCAACATCTGACCTGACCTGTGTTTCATTCAGCCGTAACAGACACCTGGCATGTTTAAATTTCATCTTCTTGTGCTGGAGCGATGTGGGGCAACAGACCAGAGCGGTGATTCCCTCATGTGTTGCTGGAAGAATGAGACAGAAACTCCCAGAAGGAAACGAAAACTACAATGGTTTATTTCCCCGTCCACTTTAGGAGAAGACTTCTGTACTGAATCACGTGTGCTGTAAAATGCTTCAAAATAAACTTGCGTACACAACAAA
>TCONS_00017605
GTTTGCATGGAAAGGGGAGCTTCATCACATGCATAAAAGGCTGATCTGCACAGCAGCGACCCGAACACAGACGCAGAGATGGACAGCGATTCAGCAAGCAGCGTTTACAGCGGATCTCAGAGCTCTGTGGAGGTGAAGGATCTCTCTCCTCCATTTTATCAGTTTAAAGCTTTCATGCCTGTGGATGAAGGTGAAGATGCTCCAGACGAGGCCAATATTAAAGTCTCACAAAGGTGCTCTTGTGGAAACTGCAGACTCACTCCAGAGGAAAACGTTTGTTGTAGAGACATACCACAGGTGAAGCACAAATGTGGCCAGGTTAACGTATGTTGCATAACAAACCACCCGGGGTTTGAGCTTGTCACTCTGAACCCAGACGTCCTGCAGGTGTCTTATTGCAGATATCAGGATGTTTATGGGAAGACACTCCCAGATCTCAACAGCCGTAACAGACACCTGGCATGTTTAAATTTCATCTTCTTGTGCTGGAGCGATGTGGGGCAACAGACCAGAGCGGTGATTCCCTCATGTGTTGCTGGAAGAATGAGACAGAAACTCCCAGAAGGAAACGAAAACTACAATGGTTTATTTCCCCGTCCACTTTAGGAGAAGACTTCTGTACTGAATCACGTGTGCTGTAAAATGCTTCAAAATAAACTTGCGTACACAACAAA

Function

symbol description
nnr Is expressed in forerunner cell group and shield.

GO:

id name namespace
GO:0048729 tissue morphogenesis biological_process
GO:0009799 specification of symmetry biological_process
GO:0048731 system development biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0035775 pronephric glomerulus morphogenesis biological_process
GO:0035239 tube morphogenesis biological_process
GO:0007498 mesoderm development biological_process
GO:0048762 mesenchymal cell differentiation biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0072102 glomerulus morphogenesis biological_process
GO:0002009 morphogenesis of an epithelium biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0065007 biological regulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0060896 neural plate pattern specification biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0060897 neural plate regionalization biological_process
GO:0001756 somitogenesis biological_process
GO:0043009 chordate embryonic development biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0048785 hatching gland development biological_process
GO:0009855 determination of bilateral symmetry biological_process
GO:0048513 animal organ development biological_process
GO:0035282 segmentation biological_process
GO:0003143 embryonic heart tube morphogenesis biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0003154 BMP signaling pathway involved in determination of left/right symmetry biological_process
GO:0035295 tube development biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:2000223 regulation of BMP signaling pathway involved in heart jogging biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0035050 embryonic heart tube development biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:1905330 regulation of morphogenesis of an epithelium biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0048568 embryonic organ development biological_process
GO:0048856 anatomical structure development biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0021915 neural tube development biological_process
GO:0033504 floor plate development biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:2000826 regulation of heart morphogenesis biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0060485 mesenchyme development biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0048332 mesoderm morphogenesis biological_process
GO:0007368 determination of left/right symmetry biological_process
GO:0007369 gastrulation biological_process
GO:1900094 regulation of transcription from RNA polymerase II promoter involved in determination of left/right symmetry biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0040017 positive regulation of locomotion biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0003007 heart morphogenesis biological_process
GO:0007389 pattern specification process biological_process
GO:0050789 regulation of biological process biological_process
GO:0061053 somite development biological_process
GO:0039019 pronephric nephron development biological_process
GO:0061311 cell surface receptor signaling pathway involved in heart development biological_process
GO:0050794 regulation of cellular process biological_process
GO:0061312 BMP signaling pathway involved in heart development biological_process
GO:0039021 pronephric glomerulus development biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0007417 central nervous system development biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0007420 brain development biological_process
GO:0021999 neural plate anterior/posterior regionalization biological_process
GO:0003303 BMP signaling pathway involved in heart jogging biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0060562 epithelial tube morphogenesis biological_process
GO:0001947 heart looping biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0072045 convergent extension involved in nephron morphogenesis biological_process
GO:1901213 regulation of transcription from RNA polymerase II promoter involved in heart development biological_process
GO:0060322 head development biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0061371 determination of heart left/right asymmetry biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030128-1 Is expressed in forerunner cell group and shield.

Ensembl:

ensembl_id ENSDARG00000058917

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017604 False 886 lncRNA 0.43 2 1589813 1590795
TCONS_00017605 True 674 mRNA 0.47 4 1589813 1590858

Neighbor

gene id symbol gene type direction distance location
XLOC_008913 trim59 coding downstream 5676 1574356 ~ 1584137 (-)
XLOC_008912 ift80 coding downstream 55555 1494493 ~ 1534258 (-)
XLOC_008911 si:dkeyp-97b10.3 coding downstream 104727 1452834 ~ 1485086 (-)
XLOC_008910 LO017713.1 coding downstream 267907 1321790 ~ 1321906 (-)
XLOC_008909 lxn coding downstream 390927 1179876 ~ 1198886 (-)
XLOC_008915 kpna4 coding upstream 5650 1596508 ~ 1622485 (-)
XLOC_008916 ppm1lb coding upstream 39957 1630815 ~ 1651766 (-)
XLOC_008917 sptssb coding upstream 89104 1679962 ~ 1687204 (-)
XLOC_008918 rabgef1l coding upstream 127810 1718668 ~ 1733259 (-)
XLOC_008919 stx1a coding upstream 143586 1734444 ~ 1746963 (-)
XLOC_008908 NA non-coding downstream 446744 1140445 ~ 1143069 (-)
XLOC_008903 NA non-coding downstream 581454 1007600 ~ 1008359 (-)
XLOC_008902 NA non-coding downstream 596226 986144 ~ 993587 (-)
XLOC_008899 NA non-coding downstream 688934 899089 ~ 900879 (-)
XLOC_008927 AL954387.2 non-coding upstream 675111 2265969 ~ 2266083 (-)
XLOC_008928 NA non-coding upstream 732808 2323666 ~ 2328284 (-)
XLOC_008932 NA non-coding upstream 1007946 2598804 ~ 2611170 (-)
XLOC_008933 NA non-coding upstream 1027421 2618279 ~ 2625928 (-)
XLOC_008940 CABZ01086049.1 non-coding upstream 1145525 2736383 ~ 2736498 (-)

Expression


Co-expression Network