XLOC_008915 (kpna4)


Basic Information

Item Value
gene id XLOC_008915
gene name kpna4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 1596508 ~ 1622485 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017606
CAGCATACACCGCGCCTCATTAGCATAAAGCATTCCGGTATCTATCTACAAGAGCCGAGCGAACACATTCAGCTCCGGAGAAGCACAAACAGCTCCAAATTCAACATTATAGCAACGCAAAACAGCAAACATGAGCGACAGCGAGAAACTGGACAAGCAGCGGCTGAAGAACTTCAAGAATAAAGGGCGCGATCTGGAGACCATGAGAAGACAGCGGACAGAAGTGGTGGTGGAACTCAGAAAGaaCAAGCGAGACGAGCACCTGCTGAAGCGGAGGAACGTCCCACATGAGGATATCTGTGACGATTCTGACGCAGTTGGAGATTTCAGAAGCCAAAACACTTCTCTTGAGGCGATCGTGCAGAATGCGACCAGTGATAACCAGGGCATTCAGCTCAGCGCGGTGCAGGCCGCCAGGAAGCTACTGTCGAGTGACCGCAACCCTCCCATAGATGACCTGATCAAGTCTGGCATTCTGCCCATCCTGGTCCACTGCCTGGACAGAGATGACAACCCGTCTCTGCAGTTTGAGGCAGCCTGGGCTCTGACCAACATCGCGTCCGGGACGTCTGAGCAGACGCAGGCCGTGGTACAATCTAATGCGGTTCCCCTGTTCCTGCGGCTGCTGCATTCTCCACATCAGAACGTCTGTGAGCAGGCGGTTTGGGCGTTAGGAAACATCATCGGTGATGGTCCTCAGTGCAGAGATTACGTCATCAGTCTGGGTGTGGTCAAACCACTCCTATCCTTCATCAGCCCCTCCATACCCATCACCTTCCTCCGTAACGTCACCTGGGTCATGGTCAACCTGTGCCGCCACAAGGACCCTCCCCCGCCCATGGAGACCATCCAGGAGATTCTCCCAGCGCTGTGTGTGCTGATTCACCACACTGATGTCAATATCCTTGTGGACACAGTCTGGGCGCTCTCCTATCTCACCGACGCTGGCAATGAGCAGATCCAGATGGTCATCGATTCTGGGATTGTGCCATACCTCGTACCATTACTGAGCCACCAGGAGGTCAAAGTTCAGACGGCAGCGCTGCGAGCGGTGGGGAATATTGTGACGGGAACAGATGAGCAGACTCAGGTGGTGCTCAACTGTGATGCTTTGGGTCACTTCCCAGCCCTGCTCACACACCCTAAAGAGAAGATCAACAAGGAGGCTGTGTGGTTCCTGTCCAACATCACAGCAGGAAACCAGCAGCAGGTTCAGGCCGTCATTGATGCCAATCTGGTGCCCATGATCATTCTGCTGCTGGATAAGGGAGATTTTGGCACTCAGAAGGAAGCAGCGTGGGCCATCAGCAACCTGACCATCAGTGGCAGAAAGGATCAGGTGGCGTACCTGATCCAGCAGCAGGTGATTCCTCCGTTCTGTAACCTGCTGACTGTGAAGGATGCTCAGGTAGTGCAGGTGGTTCTGGACGGCCTCAGTAACATTCTCAAGATGGCCGACGATGAAGCGGAGACTGTGGCCAACCTCATCGAGGAGTGTGGAGGTTTGGAGAAAATCGAGCAACTGCAGAACCATGAGAACGAGGACATCTACAAACTGGCTTACGAAATAATCGATCAGTTCTTCTCATCTGACGatATTGATGAGGACTCCAACCTGGTCCCTGAAGCCATCCAAGGGGGAACGTACAGCTTCAATTCATCCACCAACGTGCCAGCAGAAGGGTTCCAGTTCTAGACGCGAAGGGAAATCCGGAGTTTTGTTTGTGATGCAGCACTCTgttcaacattaaaaataattagagagagagagagagagcgcgagagAGTGTGAGAGAAATTAGATCCGTTGTGCTTGGCTGATGGGATCCAGCTGCATCTAATCCAAGAAGAAATTGAGTGGAGTTCCTTTGGCCTTCTGAAGGGAGCGTCCCGGCGGCGTTTGAGACGGCTTTGAGTGGATGCGAGCGAATGCGAGTGAGTGGCTGACTACTACTACTtttcaaaaacaaactaaaaacacgACCAtctcaaaagaaataaataaatacgaatCAAACACGCTCGGAGAAGAAAACTTCACGAAATACTACCCAGCGTGTCTTTTCAACACAAACCAATGGGAATAATGAAGACAACATTTAGGAATCTGAGGTAAGAACGCTAAAGGAGATCCTCACCAACAAAGAGACACGAACACACTCCTGCGgtcgcctgtgtgtgtgtgtgtgtgtgtgtgtaagtctgtGTGAATGATGCTGTGCTGGAAAACAGACCCAGCCGACCAGAGCCCTCTCCCGCTGTCCAACGGCACGAGTGGACGtgatgggtgtgtgtgtatgcgcgctTGACTGACTGACGTGACTGGCTGTTGAAATGCAGGACTGAATGTAACGAACGCAGCGAGTCGACACGGGGGGGGAAATCAACCGGAAGATGACGACTAATCTGGGGAAATTCAGCAGCAAATTGAGGATTAGCCCGAAAGAGGAGGCTAAACGAATTTGGAAACAAATGTAAACACACTTCAGTTGAAAGACTGGACATCAGTGATCTCAAGAAGACAATGTCATGACTTTAATTTCGTTTTAACCTTATTTAGTGTTGATGACACTGGACTGAGCGTCGAGGAGGCGTGCCGCTGGGTTCTGTGCTTGGTCCcggtgttgttgttgtcgttgttgttcgCTCAATCACTTTTTATTTTCGTCTTCCCTCATTTCGGCTTTTATTTCTCAGTGCTggtgtaaatacatttaatacacatTGTGCACTGTATCTTTGCACACACTTGGGCTATTGTACATTTGGAGACCCTTAAAGCTTTGCTTTCATGACGATTCATCCCCCCGGCCCCCATTTCTGTTATTGGGAAACTCCCAACTCTGCGGCGGTGATCATGTGGGGAGGTGTTTTATGTATGAGAGGTTTCGGACATATCCTTTGCATGTGCTAAACTGCAGTATAGTTCATTTCTTTTAGTGGGTTTTAGTTTTGTAAGCTTTTCTCCTTttcttttaaagcaaaaaaaaaaacctactgtaATGTTTCTGTGACCCTTTTTTTGGCCCCAAACAGACGAGCAATTCAACACCGTTTGGCACATTGCAGAatttaaaatgtgttggaaaGACGGACGCTACTCAAACTACTTGTAGTGCAAATACTGAGTCCGTCTTGACCTGTAGATATTCATGTTGGGTGTTGAGCAACATGCATCACatgtacgtatgtgtgtgtgtgtgtggcagactGTGCCGTGCCTTCATCCTCAAGCACGTACAGATACTGGTCTGAAAGCGCTGTAGGTTTACCATCCTTTTGTTTCTTAATTTTAGTTGACTGTAGAGCTGTCTTTGTTTCGCATAACCTCTTGATGgctatattatgttttattctcATCCCGCCCTCCCCAACAGCATTCCTTGTTTGCAAATATGTAGtttcagaagaagaaaaaaatagatgGTATACCTATCCTGTTGGACATAGACTACAGGCTCTGTACctattcaaataaatattcaaatgtgTCACA
>TCONS_00017607
cgcgcgttgcctgcgccgtgagttgcgccggtcacttgacgcagaagtataaaccaggcttaagtcaaCAATTTAAGCAGATCAAAACctttaagttgtcctaaaactattgaatgACACCTATTCTCGTCTAAGGATAGTTATTCATTAACAGACATTTCACACCATACATTCCTAAACCCTGGGTGTTACAGGTGTGAAAAGTATCTTTACCTGAGGTTAAAAACAGCGTTTCGAACGATGATTGTTTGTAAAAAGATTTGCACGTTAGGTAATGAAAGTGTTTTATTATCGCAGATGCGGTTCCCCTGTTCCTGCGGCTGCTGCATTCTCCACATCAGAACGTCTGTGAGCAGGCGGTTTGGGCGTTAGGAAACATCATCGGTGATGGTCCTCAGTGCAGAGATTACGTCATCAGTCTGGGTGTGGTCAAACCACTCCTATCCTTCATCAGCCCCTCCATACCCATCACCTTCCTCCGTAACGTCACCTGGGTCATGGTCAACCTGTGCCGCCACAAGGACCCTCCCCCGCCCATGGAGACCATCCAGGAGATTCTCCCAGCGCTGTGTGTGCTGATTCACCACACTGATGTCAATATCCTTGTGGACACAGTCTGGGCGCTCTCCTATCTCACCGACGCTGGCAATGAGCAGATCCAGATGGTCATCGATTCTGGGATTGTGCCATACCTCGTACCATTACTGAGCCACCAGGAGGTCAAAGTTCAGACGGCAGCGCTGCGAGCGGTGGGGAATATTGTGACGGGAACAGATGAGC
>TCONS_00017608
CATTAGCATAAAGCATTCCGGTATCTATCTACAAGAGCCGAGCGAACACATTCAGCTCCGGAGAAGCACAAACAGCTCCAAATTCAACATTATAGCAACGCAAAACAGCAAACATGAGCGACAGCGAGAAACTGGACAAGCAGCGGCTGAAGAACTTCAAGAATAAAGGGCGCGATCTGGAGACCATGAGAAGACAGCGGACAGAAGTGGTGGTGGAACTCAGAAAGaaCAAGCGAGACGAGCACCTGCTGAAGCGGAGGAACGTCCCACATGAGGATATCTGTGACGATTCTGACGCAGTTGGAGATTTCAGAAGCAATGCGACCAGTGATAACCAGGGCATTCAGCTCAGCGCGGTGCAGGCCGCCAGGAAGCTACTGTCGAGTGACCGCAACCCTCCCATAGATGACCTGATCAAGTCTGGCATTCTGCCCATCCTGGTCCACTGCCTGGACAGAGATGACAACCCGTCTCTGCAGTTTGAGGCAGCCTGGGCTCTGACCAACATCGCGTCCGGGACGTCTGAGCAGACGCAGGCCGTGGTACAATCTAATGCGGTTCCCCTGTTCCTGCGGCTGCTGCATTCTCCACATCAGAACGTCTGTGAGCAGGCGGTTTGGGCGTTAGGAAACATCATCGGTGATGGTCCTCAGTGCAGAGATTACGTCATCAGTCTGGGTGTGGTCAAACCACTCCTATCCTTCATCAGCCCCTCCATACCCATCACCTTCCTCC

Function

symbol description
kpna4 Predicted to enable nuclear import signal receptor activity and nuclear localization sequence binding activity. Predicted to be involved in NLS-bearing protein import into nucleus. Predicted to act upstream of or within protein import into nucleus. Predicted to be located in cytoplasm. Predicted to be active in nucleoplasm. Orthologous to human KPNA4 (karyopherin subunit alpha 4).

GO:

id name namespace
GO:0006606 protein import into nucleus biological_process
GO:0006607 NLS-bearing protein import into nucleus biological_process
GO:0015031 protein transport biological_process
GO:0005634 nucleus cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008139 nuclear localization sequence binding molecular_function
GO:0061608 nuclear import signal receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-5584 Predicted to enable nuclear import signal receptor activity and nuclear localization sequence binding activity. Predicted to be involved in NLS-bearing protein import into nucleus. Predicted to act upstream of or within protein import into nucleus. Predicted to be located in cytoplasm. Predicted to be active in nucleoplasm. Orthologous to human KPNA4 (karyopherin subunit alpha 4).

Ensembl:

ensembl_id ENSDARG00000023190

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017606 False 3496 mRNA 0.49 17 1596508 1622485
TCONS_00017607 False 780 lncRNA 0.50 5 1606849 1611693
TCONS_00017608 True 735 mRNA 0.53 8 1610224 1622468

Neighbor

gene id symbol gene type direction distance location
XLOC_008914 nnr coding downstream 5650 1589813 ~ 1590858 (-)
XLOC_008913 trim59 coding downstream 12371 1574356 ~ 1584137 (-)
XLOC_008912 ift80 coding downstream 62250 1494493 ~ 1534258 (-)
XLOC_008911 si:dkeyp-97b10.3 coding downstream 111422 1452834 ~ 1485086 (-)
XLOC_008910 LO017713.1 coding downstream 274602 1321790 ~ 1321906 (-)
XLOC_008916 ppm1lb coding upstream 8330 1630815 ~ 1651766 (-)
XLOC_008917 sptssb coding upstream 57477 1679962 ~ 1687204 (-)
XLOC_008918 rabgef1l coding upstream 96183 1718668 ~ 1733259 (-)
XLOC_008919 stx1a coding upstream 111959 1734444 ~ 1746963 (-)
XLOC_008920 bud23 coding upstream 127358 1749843 ~ 1765137 (-)
XLOC_008908 NA non-coding downstream 453439 1140445 ~ 1143069 (-)
XLOC_008903 NA non-coding downstream 588149 1007600 ~ 1008359 (-)
XLOC_008902 NA non-coding downstream 602921 986144 ~ 993587 (-)
XLOC_008899 NA non-coding downstream 695629 899089 ~ 900879 (-)
XLOC_008927 AL954387.2 non-coding upstream 643484 2265969 ~ 2266083 (-)
XLOC_008928 NA non-coding upstream 701181 2323666 ~ 2328284 (-)
XLOC_008932 NA non-coding upstream 976319 2598804 ~ 2611170 (-)
XLOC_008933 NA non-coding upstream 995794 2618279 ~ 2625928 (-)
XLOC_008940 CABZ01086049.1 non-coding upstream 1113898 2736383 ~ 2736498 (-)

Expression


Co-expression Network