XLOC_008920 (bud23)


Basic Information

Item Value
gene id XLOC_008920
gene name bud23
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 1749843 ~ 1765137 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017617
GAATGACGTCATCCCTGCTGGCCACGTTCCCCTGCCCATGTGTTATTAGCAGTCtgtgtatatttttttcagtggtgTTGTGATCTCTAATAAATCATAGTCACAAGTTTTCAGTCACAATCATCATCATGTCTTCAAGCTGCCGCAGACCCGAACACATGGCACCTCCGGAGGTGttttaCAACGAAGAAGAGGCCAAAAAATACTCCCAGAACTCTCGGATGATTGAGATCCAGACACAGATGTCGGAGCGAGCCGTCGAGCTGCTCAATCTGCCCGAGGATCAGCCCTGTTACCTGCTGGATGTGGGCTGTGGCTCTGGCCTGAGTGGGGATTATCTGTCTGAAGCCGGACACTACTGGGTGGGTGTGGACATCAGCACCGCCATGCTGGATGTGGCCTTGGAGCGAGAGGTGGAGGGAGATCTCCTGCTGGGCGATATGGGTGAGGGAATGCCCTTCAGACCGGGCATGTTTGACGGGTGTATAAGTATTTCAGCGCTGCAGTGGTTGTGTAACGCAGACAAGAAAACACACAGTCCACCAAAGAGACTGTACCGCTTCTTCAGCACATTATACTCATCGCTGGCGAGAGGAGCGCGTGCTGTTTTCCAGATATACCCTGAAAACTCCGAGCAGTTGGAGCTGATAACGGCTCAGGCCATGAAAGCTGGATTTACAGGCGGGATGGTGGTAGACTATCCCAACAGCAGCAAAGCCAAAAAGTTTTTCCTGTGTTTGTTTGCTGGTGTTTCAGGTGTTTTACCCAAGGGTTTGGATTCAGAAACGGCAGTCAGAGGCGTTGTAAATCAGGCTCAGTTCACTGCACAGAGgtcTCGTTTCAAAAATATGAAAGGGAAGTCTGCGAAGAAAAGTAAGGACTGGATCTTGGATAAGAAGGAAAGACGCCGCCGACAGGGAAAGGACGTAAGGGCTGACACCAAGTACACCGGCCGACACCGGAAACCTAAATTTTAACTCTTCAAGTGCATCGTACATCCACTGAACATACAGCAGAGTTGTCTGATATCCAATTTACTGGATCCAGTTACCACTCATACCTGTGCTGATCAGTGAGAACTATGACCTTTATGAGGATCTCAACACAATAGAGACACAAATGGAGAGAGatttattaacaaacaaacaatgaatggACTTTTTGTGCAGTGGGATCAATATATGGATTATCTCTGAATTAGCTGAATCCTTAATAAactatattaatgtaa
>TCONS_00017618
GTGTTATTAGCAGTCtgtgtatatttttttcagtggtgTTGTGATCTCTAATAAATCATAGTCACAAGTTTTCAGTCACAATCATCATCATGTCTTCAAGCTGCCGCAGACCCGAACACATGGCACCTCCGGAGGTGttttaCAACGAAGAAGAGGCCAAAAAATACTCCCAGAACTCTCGGATGATTGAGATCCAGACACAGATGTCGGAGCGAGCCGTCGAGCTGCTCAATCTGCCCGAGGATCAGCCCTGTTACCTGCTGGATGTGGGCTGTGGCTCTGGCCTGAGTGGGGATTATCTGTCTGAAGCCGGACACTACTGGATGTGGCCTTGGAGCGAGAGGTGGAGGGAGATCTCCTGCTGGGCGATATGGGTGAGGGAATGCCCTTCAGACCGGGCATGTTTGACGGGTGTATAAGTATTTCAGCGCTGCAGTGGTTGTGTAACGCAGACAAGAAAACACACAGTCCACCAAAGAGACTGTACCGCTTCTTCAGCACATTATACTCATCGCTG

Function

symbol description
bud23 Predicted to enable rRNA (guanine) methyltransferase activity. Predicted to be involved in rRNA (guanine-N7)-methylation. Predicted to be located in cytoplasm and nucleus. Predicted to be active in nucleolus. Human ortholog(s) of this gene implicated in Williams-Beuren syndrome. Orthologous to human BUD23 (BUD23 rRNA methyltransferase and ribosome maturation factor).

GO:

id name namespace
GO:0070476 rRNA (guanine-N7)-methylation biological_process
GO:0005730 nucleolus cellular_component
GO:0016435 rRNA (guanine) methyltransferase activity molecular_function
GO:0008168 methyltransferase activity molecular_function

KEGG:

id description
ko03009 Ribosome biogenesis

ZFIN:

id description
ZDB-GENE-070410-68 Predicted to enable rRNA (guanine) methyltransferase activity. Predicted to be involved in rRNA (guanine-N7)-methylation. Predicted to be located in cytoplasm and nucleus. Predicted to be active in nucleolus. Human ortholog(s) of this gene implicated in Williams-Beuren syndrome. Orthologous to human BUD23 (BUD23 rRNA methyltransferase and ribosome maturation factor).

Ensembl:

ensembl_id ENSDARG00000063596

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017617 False 1231 mRNA 0.47 12 1749843 1765137
TCONS_00017618 True 517 mRNA 0.50 6 1756141 1765098

Neighbor

gene id symbol gene type direction distance location
XLOC_008919 stx1a coding downstream 2880 1734444 ~ 1746963 (-)
XLOC_008918 rabgef1l coding downstream 16584 1718668 ~ 1733259 (-)
XLOC_008917 sptssb coding downstream 62639 1679962 ~ 1687204 (-)
XLOC_008916 ppm1lb coding downstream 98077 1630815 ~ 1651766 (-)
XLOC_008915 kpna4 coding downstream 127358 1596508 ~ 1622485 (-)
XLOC_008921 mmp28 coding upstream 13636 1778773 ~ 1822548 (-)
XLOC_008922 taf15 coding upstream 60035 1825172 ~ 1844048 (-)
XLOC_008923 porb coding upstream 81998 1847135 ~ 1885247 (-)
XLOC_008924 dock10 coding upstream 132238 1897375 ~ 2010926 (-)
XLOC_008925 taar12m coding upstream 285991 2051128 ~ 2052259 (-)
XLOC_008910 LO017713.1 non-coding downstream 427937 1321790 ~ 1321906 (-)
XLOC_008908 NA non-coding downstream 606774 1140445 ~ 1143069 (-)
XLOC_008903 NA non-coding downstream 741484 1007600 ~ 1008359 (-)
XLOC_008902 NA non-coding downstream 756256 986144 ~ 993587 (-)
XLOC_008899 NA non-coding downstream 848964 899089 ~ 900879 (-)
XLOC_008927 AL954387.2 non-coding upstream 500832 2265969 ~ 2266083 (-)
XLOC_008928 NA non-coding upstream 558529 2323666 ~ 2328284 (-)
XLOC_008932 NA non-coding upstream 833667 2598804 ~ 2611170 (-)
XLOC_008933 NA non-coding upstream 853142 2618279 ~ 2625928 (-)
XLOC_008940 CABZ01086049.1 non-coding upstream 971246 2736383 ~ 2736498 (-)

Expression


Co-expression Network